| Protein: | CDC23 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 626 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC23.
| Description | E-value | Query Range |
Subject Range |
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2.0E-93 | [141..623] | [15..474] |
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4.0E-93 | [150..623] | [14..464] |
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5.0E-93 | [150..623] | [14..464] |
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4.0E-92 | [150..623] | [53..503] |
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3.0E-86 | [136..623] | [42..506] |
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2.0E-83 | [16..581] | [62..617] |
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6.0E-72 | [1..626] | [1..626] |
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Region A: Residues: [1-112] |
1 11 21 31 41 51
| | | | | |
1 MNDDSQDKII HDIRIQLRKA ATELSRWKLY GSSKWAAEAL AGLAEAIDVD QTHSLADESP 60
61 LRNKQGVPKQ MFEIPQNGFG LSETEYDLYL LGSTLFDAKE FDRCVFFLKD VT
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.389 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.431 | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.542 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.433 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.415 | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.386 | a.135.1 | Tetraspanin |
| View | Download | 0.374 | a.24.4 | Hemerythrin |
| View | Download | 0.348 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.336 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.332 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.317 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.281 | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
| View | Download | 0.279 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.279 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.272 | a.74.1 | Cyclin-like |
| View | Download | 0.261 | a.7.8 | GAT domain |
| View | Download | 0.260 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.259 | a.66.1 | Transducin (alpha subunit), insertion domain |
| View | Download | 0.258 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.253 | a.83.1 | Guanido kinase N-terminal domain |
| View | Download | 0.253 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.247 | a.118.8 | TPR-like |
| View | Download | 0.240 | d.2.1 | Lysozyme-like |
| View | Download | 0.239 | a.126.1 | Serum albumin-like |
| View | Download | 0.238 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.237 | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.237 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.232 | a.74.1 | Cyclin-like |
| View | Download | 0.215 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.213 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.208 | d.52.2 | GMP synthetase C-terminal dimerisation domain |
| View | Download | 0.207 | a.59.1 | PAH2 domain |
| View | Download | 0.206 | a.24.3 | Cytochromes |
| View | Download | 0.200 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
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Region A: Residues: [113-203] |
1 11 21 31 41 51
| | | | | |
1 NPYLKFLKLY SKFLSWDKKS QESMENILTT GKFTDEMYRA NKDGDGSGNE DINQSGHQRA 60
61 NLKMVSNEHE SQSNISSILK EINTFLESYE I
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| Detection Method: | |
| Confidence: | 10.522879 |
| Match: | 1a17__ |
| Description: | Protein phosphatase 5 |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [204-343] |
1 11 21 31 41 51
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1 KIDDDEADLG LALLYYLRGV ILKQEKNISK AMSSFLKSLS CYSFNWSCWL ELMDCLQKVD 60
61 DALLLNNYLY QNFQFKFSEN LGSQRTIEFN IMIKFFKLKV FEELNGQLED YFEDLEFLLQ 120
121 VFPNFTFLKA YNATISYNNL
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| Detection Method: | |
| Confidence: | 34.69897 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [344-411] |
1 11 21 31 41 51
| | | | | |
1 DYVTAESRFD DIVKQDPYRL NDLETYSNIL YVMQKNSKLA YLAQFVSQID RFRPETCCII 60
61 ANYYSARQ
|
| Detection Method: | |
| Confidence: | 34.69897 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
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Region A: Residues: [412-497] |
1 11 21 31 41 51
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1 EHEKSIMYFR RALTLDKKTT NAWTLMGHEF VELSNSHAAI ECYRRAVDIC PRDFKAWFGL 60
61 GQAYALLDMH LYSLYYFQKA CTLKPW
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| Detection Method: | |
| Confidence: | 34.69897 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [498-626] |
1 11 21 31 41 51
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1 DRRIWQVLGE CYSKTGNKVE AIKCYKRSIK ASQTVDQNTS IYYRLAQLYE ELEDLQECKK 60
61 FMMKCVDVEE LLEGIVTDET VKARLWLAIF EIKAGNYQLA YDYAMGVSSG TSQEIEEARM 120
121 LARECRRHM
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| Detection Method: | |
| Confidence: | 4.69897 |
| Match: | 1jcqA_ |
| Description: | Protein farnesyltransferase alpha-subunit |
Matching Structure (courtesy of the PDB): |
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