| Protein: | PRP8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 2413 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP8.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [55..2413] | [5..2363] |
|
|
0.0 | [1..2413] | [1..2413] |
|
|
0.0 | [808..2407] | [782..2172] |
|
|
0.0 | [65..2413] | [3..2335] |
|
|
0.0 | [494..2231] | [315..1952] |
|
|
0.0 | [96..2411] | [24..2398] |
|
|
0.0 | [62..2413] | [12..2382] |
|
|
0.0 | [106..2413] | [13..2317] |
|
|
0.0 | [108..2412] | [16..2319] |
|
|
0.0 | [65..2413] | [3..2335] |
|
Region A: Residues: [1-237] |
1 11 21 31 41 51
| | | | | |
1 MSGLPPPPPG FEEDSDLALP PPPPPPPGYE IEELDNPMVP SSVNEDTFLP PPPPPPSNFE 60
61 INAEEIVDFT LPPPPPPPGL DELETKAEKK VELHGKRKLD IGKDTFVTRK SRKRAKKMTK 120
121 KAKRSNLYTP KAEMPPEHLR KIINTHSDMA SKMYNTDKKA FLGALKYLPH AILKLLENMP 180
181 HPWEQAKEVK VLYHTSGAIT FVNETPRVIE PVYTAQWSAT WIAMRREKRD RTHFKRM
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [238-803] |
1 11 21 31 41 51
| | | | | |
1 RFPPFDDDEP PLSYEQHIEN IEPLDPINLP LDSQDDEYVK DWLYDSRPLE EDSKKVNGTS 60
61 YKKWSFDLPE MSNLYRLSTP LRDEVTDKNY YYLFDKKSFF NGKALNNAIP GGPKFEPLYP 120
121 REEEEDYNEF NSIDRVIFRV PIRSEYKVAF PHLYNSRPRS VRIPWYNNPV SCIIQNDEEY 180
181 DTPALFFDPS LNPIPHFIDN NSSLNVSNTK ENGDFTLPED FAPLLAEEEE LILPNTKDAM 240
241 SLYHSPFPFN RTKGKMVRAQ DVALAKKWFL QHPDEEYPVK VKVSYQKLLK NYVLNELHPT 300
301 LPTNHNKTKL LKSLKNTKYF QQTTIDWVEA GLQLCRQGHN MLNLLIHRKG LTYLHLDYNF 360
361 NLKPTKTLTT KERKKSRLGN SFHLMRELLK MMKLIVDTHV QFRLGNVDAF QLADGIHYIL 420
421 NHIGQLTGIY RYKYKVMHQI RACKDLKHII YYKFNKNLGK GPGCGFWQPA WRVWLNFLRG 480
481 TIPLLERYIG NLITRQFEGR SNEIVKTTTK QRLDAYYDLE LRNSVMDDIL EMMPESIRQK 540
541 KARTILQHLS EAWRCWKANI PWDVPG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [804-1022] |
1 11 21 31 41 51
| | | | | |
1 MPAPIKKIIE RYIKSKADAW VSAAHYNRER IKRGAHVEKT MVKKNLGRLT RLWIKNEQER 60
61 QRQIQKNGPE ITPEEATTIF SVMVEWLESR SFSPIPFPPL TYKNDTKILV LALEDLKDVY 120
121 ASKVRLNASE REELALIEEA YDNPHDTLNR IKKYLLTQRV FKPVDITMME NYQNISPVYS 180
181 VDPLEKITDA YLDQYLWYEA DQRKLFPNWI KPSDSEIPP
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1023-1282] |
1 11 21 31 41 51
| | | | | |
1 LLVYKWTQGI NNLSEIWDVS RGQSAVLLET TLGEMAEKID FTLLNRLLRL IVDPNIADYI 60
61 TAKNNVVINF KDMSHVNKYG LIRGLKFASF IFQYYGLVID LLLLGQERAT DLAGPANNPN 120
121 EFMQFKSKEV EKAHPIRLYT RYLDRIYMLF HFEEDEGEEL TDEYLAENPD PNFENSIGYN 180
181 NRKCWPKDSR MRLIRQDVNL GRAVFWEIQS RVPTSLTSIK WENAFVSVYS KNNPNLLFSM 240
241 CGFEVRILPR QRMEEVVSND
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1283-2068] |
1 11 21 31 41 51
| | | | | |
1 EGVWDLVDER TKQRTAKAYL KVSEEEIKKF DSRIRGILMA SGSTTFTKVA AKWNTSLISL 60
61 FTYFREAIVA TEPLLDILVK GETRIQNRVK LGLNSKMPTR FPPAVFYTPK ELGGLGMISA 120
121 SHILIPASDL SWSKQTDTGI THFRAGMTHE DEKLIPTIFR YITTWENEFL DSQRVWAEYA 180
181 TKRQEAIQQN RRLAFEELEG SWDRGIPRIS TLFQRDRHTL AYDRGHRIRR EFKQYSLERN 240
241 SPFWWTNSHH DGKLWNLNAY RTDVIQALGG IETILEHTLF KGTGFNSWEG LFWEKASGFE 300
301 DSMQFKKLTH AQRTGLSQIP NRRFTLWWSP TINRANVYVG FLVQLDLTGI FLHGKIPTLK 360
361 ISLIQIFRAH LWQKIHESIV FDICQILDGE LDVLQIESVT KETVHPRKSY KMNSSAADIT 420
421 MESVHEWEVS KPSLLHETND SFKGLITNKM WFDVQLRYGD YDSHDISRYV RAKFLDYTTD 480
481 NVSMYPSPTG VMIGIDLAYN MYDAYGNWFN GLKPLIQNSM RTIMKANPAL YVLRERIRKG 540
541 LQIYQSSVQE PFLNSSNYAE LFNNDIKLFV DDTNVYRVTV HKTFEGNVAT KAINGCIFTL 600
601 NPKTGHLFLK IIHTSVWAGQ KRLSQLAKWK TAEEVSALVR SLPKEEQPKQ IIVTRKAMLD 660
661 PLEVHMLDFP NIAIRPTELR LPFSAAMSID KLSDVVMKAT EPQMVLFNIY DDWLDRISSY 720
721 TAFSRLTLLL RALKTNEESA KMILLSDPTI TIKSYHLWPS FTDEQWITIE SQMRDLILTE 780
781 YGRKYN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [2069-2151] |
1 11 21 31 41 51
| | | | | |
1 VNISALTQTE IKDIILGQNI KAPSVKRQKM AELEAARSEK QNDEEAAGAS TVMKTKTINA 60
61 QGEEIVVVAS ADYESQTFSS KNE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
|
Region A: Residues: [2152-2322] |
1 11 21 31 41 51
| | | | | |
1 WRKSAIANTL LYLRLKNIYV SADDFVEEQN VYVLPKNLLK KFIEISDVKI QVAAFIYGMS 60
61 AKDHPKVKEI KTVVLVPQLG HVGSVQISNI PDIGDLPDTE GLELLGWIHT QTEELKFMAA 120
121 SEVATHSKLF ADKKRDCIDI SIFSTPGSVS LSAYNLTDEG YQWGEENKDI M
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [2323-2413] |
1 11 21 31 41 51
| | | | | |
1 NVLSEGFEPT FSTHAQLLLS DRITGNFIIP SGNVWNYTFM GTAFNQEGDY NFKYGIPLEF 60
61 YNEMHRPVHF LQFSELAGDE ELEAEQIDVF S
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.546 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.570 | b.36.1 | PDZ domain-like |
| View | Download | 0.510 | d.93.1 | SH2 domain |
| View | Download | 0.531 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.498 | c.9.1 | Barstar (barnase inhibitor) |
| View | Download | 0.449 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.442 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.441 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.425 | b.61.4 | Quinohemoprotein amine dehydrogenase A chain, domain 3 |
| View | Download | 0.396 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.394 | d.20.1 | UBC-like |
| View | Download | 0.387 | d.93.1 | SH2 domain |
| View | Download | 0.383 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.359 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.352 | d.233.1 | Inhibitor of vertebrate lysozyme, Ivy |
| View | Download | 0.350 | d.129.2 | Phosphoglucomutase, C-terminal domain |
| View | Download | 0.347 | d.204.1 | Ribosome binding protein Y (YfiA homologue) |
| View | Download | 0.332 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.329 | b.1.20 | Tp47 lipoprotein, middle and C-terminal domains |
| View | Download | 0.323 | b.1.18 | E set domains |
| View | Download | 0.320 | d.93.1 | SH2 domain |
| View | Download | 0.287 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.284 | b.1.2 | Fibronectin type III |
| View | Download | 0.280 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.259 | b.1.5 | Transglutaminase, two C-terminal domains |
| View | Download | 0.243 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.236 | b.1.1 | Immunoglobulin |
| View | Download | 0.226 | d.21.1 | Diaminopimelate epimerase-like |
| View | Download | 0.225 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.220 | a.28.1 | ACP-like |
| View | Download | 0.215 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.212 | d.15.1 | Ubiquitin-like |
| View | Download | 0.210 | d.198.1 | Type III secretory system chaperone |
| View | Download | 0.205 | d.20.1 | UBC-like |
| View | Download | 0.202 | d.16.1 | FAD-linked reductases, C-terminal domain |
|
Region A: Residues: [1331-1527] |
1 11 21 31 41 51
| | | | | |
1 VAAKWNTSLI SLFTYFREAI VATEPLLDIL VKGETRIQNR VKLGLNSKMP TRFPPAVFYT 60
61 PKELGGLGMI SASHILIPAS DLSWSKQTDT GITHFRAGMT HEDEKLIPTI FRYITTWENE 120
121 FLDSQRVWAE YATKRQEAIQ QNRRLAFEEL EGSWDRGIPR ISTLFQRDRH TLAYDRGHRI 180
181 RREFKQYSLE RNSPFWW
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1528-1578] |
1 11 21 31 41 51
| | | | | |
1 TNSHHDGKLW NLNAYRTDVI QALGGIETIL EHTLFKGTGF NSWEGLFWEK A
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1579-1650] |
1 11 21 31 41 51
| | | | | |
1 SGFEDSMQFK KLTHAQRTGL SQIPNRRFTL WWSPTINRAN VYVGFLVQLD LTGIFLHGKI 60
61 PTLKISLIQI FR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.697 | N/A | N/A | d.93.1 | SH2 domain |
| View | Download | 0.667 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.644 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.604 | N/A | N/A | d.130.1 | S-adenosylmethionine synthetase |
| View | Download | 0.595 | N/A | N/A | d.93.1 | SH2 domain |
|
Region A: Residues: [1651-1743] |
1 11 21 31 41 51
| | | | | |
1 AHLWQKIHES IVFDICQILD GELDVLQIES VTKETVHPRK SYKMNSSAAD ITMESVHEWE 60
61 VSKPSLLHET NDSFKGLITN KMWFDVQLRY GDY
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1744-1998] |
1 11 21 31 41 51
| | | | | |
1 DSHDISRYVR AKFLDYTTDN VSMYPSPTGV MIGIDLAYNM YDAYGNWFNG LKPLIQNSMR 60
61 TIMKANPALY VLRERIRKGL QIYQSSVQEP FLNSSNYAEL FNNDIKLFVD DTNVYRVTVH 120
121 KTFEGNVATK AINGCIFTLN PKTGHLFLKI IHTSVWAGQK RLSQLAKWKT AEEVSALVRS 180
181 LPKEEQPKQI IVTRKAMLDP LEVHMLDFPN IAIRPTELRL PFSAAMSIDK LSDVVMKATE 240
241 PQMVLFNIYD DWLDR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1999-2070] |
1 11 21 31 41 51
| | | | | |
1 ISSYTAFSRL TLLLRALKTN EESAKMILLS DPTITIKSYH LWPSFTDEQW ITIESQMRDL 60
61 ILTEYGRKYN VN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [2071-2413] |
1 11 21 31 41 51
| | | | | |
1 ISALTQTEIK DIILGQNIKA PSVKRQKMAE LEAARSEKQN DEEAAGASTV MKTKTINAQG 60
61 EEIVVVASAD YESQTFSSKN EWRKSAIANT LLYLRLKNIY VSADDFVEEQ NVYVLPKNLL 120
121 KKFIEISDVK IQVAAFIYGM SAKDHPKVKE IKTVVLVPQL GHVGSVQISN IPDIGDLPDT 180
181 EGLELLGWIH TQTEELKFMA ASEVATHSKL FADKKRDCID ISIFSTPGSV SLSAYNLTDE 240
241 GYQWGEENKD IMNVLSEGFE PTFSTHAQLL LSDRITGNFI IPSGNVWNYT FMGTAFNQEG 300
301 DYNFKYGIPL EFYNEMHRPV HFLQFSELAG DEELEAEQID VFS
|
| Detection Method: | |
| Confidence: | 93.69897 |
| Match: | 2og4A |
| Description: | No description for 2og4A was found. |
