YRC Public Data Repository - Protein Structure Prediction

Protein:	SKG6
Organism:	Saccharomyces cerevisiae
Length:	734 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SKG6.

Description	E-value	Query Range	Subject Range
SKG6 - Integral membrane protein that localizes primarily to growing sites such as the bud tip or the cell ... SKG6_YEAST - Protein SKG6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKG6 PE=1 SV=2	0.0	[1..734]	[1..734]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-58	[187..511]	[230..555]
gi\|242373271, gi... - gi\|242373271\|ref\|ZP_04818845.1\| autolysin [Staphylococcus epidermidis M23864:W1], gi\|242348981\|gb\|EE... gi\|13272276 - gi\|13272276\|gb\|AAK17065.1\| fibronectin binding autolysin [Staphylococcus caprae]	3.0E-53	[183..506]	[35..380]
ptr1 - HECT domain PTR1_SCHPO - E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ptr1 PE=1...	3.0E-43	[132..367]	[1795..2036]
gi\|14210081 - gi\|14210081\|gb\|AAK56925.1\|AF369907_1 Iga1 protease type 2 [Haemophilus influenzae biotype aegyptius]	4.0E-43	[198..520]	[1059..1403]
gi\|7381274 - gi\|7381274\|gb\|AAF61466.1\|AF145028_1 amidase-hexosaminidase [Staphylococcus simulans]	1.0E-39	[227..511]	[21..304]
gi\|15924943, gi\|... - gi\|15924943\|ref\|NP_372477.1\| phi PVL ORF 20 and 21-like protein [Staphylococcus aureus subsp. aureus... gi\|255006739 - gi\|255006739\|ref\|ZP_05145340.2\| hypothetical protein SauraM_09735 [Staphylococcus aureus subsp. aure... gi\|156980270, gi... - gi\|156980270\|ref\|YP_001442529.1\| phi PVL ORF 20 and 21 homologue [Staphylococcus aureus subsp. aureu...	2.0E-38	[276..497]	[590..807]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYHTHMHESL ISVTSTVSVS DASYAYARLT RRDDSDSSSS SASSTKNSKS AECTGSKQQC  60
   61 QLPTDSSHST SVTVGVAVAV PVGVIIIVLA VILCIVYRRS KKEAEEDNDP DFEGDSEFLP 120
  121 TMKDYSPGIN HLYSS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [136-536]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSQQDFMEKT LQQPPSDPFV GSMHSSKYNV RSATPPAIGR SWYVDPFQLP QESNDSNSLR  60
   61 DFAMRVQEDG LGGYKVAAES RNASQTSLHP DNFSNCTPIR ASSRFQESES FRSHGSPIHN 120
  121 NQLSRGSATE GANKQFTFPN EDNDSSSVSE EAEVLNESNE SASNDAFEFE LDNSSEKTHE 180
  181 RNLRFGKDDD NYELQDIREA EHMNDRSSSK SQDDDYYVSL LSPNEEEDIK RMKSIYQVYL 240
  241 DRAKTMKKEE DKADNANDIS QEENRVDNIV QNPLPSIKIN NNDNIDNNEV PEAKHLVKEA 300
  301 LPLNNTNLAE YGPEMAQSQK QYPVQDTLTV NDTEAAPSNR IASSIYSEAI QPLNYQDQYQ 360
  361 QQEQSPVYNG HTQYPGNGYS GNPQQQGYTA QFVQNPQWYG V

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [537-734]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTPQQQQHNH PQTLETIGEL PTPAYLAQSA SSHSLTSFKR PNKQQLLQLQ TARLNGTALN  60
   61 PVDHPEMFYS PTNDAYYAPQ QQGQYMKFNE NGAVPSPYQL RQSVVMTNPS DLTAKPSYKP 120
  121 AGSFRSVSAT NSRNNSLTTQ NNIYLQQQQQ QLYNSRVSGI LEETDVVQPP SVGGILPHSG 180
  181 SQDDLRKQLG SSHNYTVN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [512-734]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGYSGNPQQQ GYTAQFVQNP QWYGVPTPQQ QQHNHPQTLE TIGELPTPAY LAQSASSHSL  60
   61 TSFKRPNKQQ LLQLQTARLN GTALNPVDHP EMFYSPTNDA YYAPQQQGQY MKFNENGAVP 120
  121 SPYQLRQSVV MTNPSDLTAK PSYKPAGSFR SVSATNSRNN SLTTQNNIYL QQQQQQLYNS 180
  181 RVSGILEETD VVQPPSVGGI LPHSGSQDDL RKQLGSSHNY TVN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits