| Protein: | SKG6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 734 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SKG6.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..734] | [1..734] |
|
|
2.0E-58 | [187..511] | [230..555] |
|
|
3.0E-53 | [183..506] | [35..380] |
|
|
3.0E-43 | [132..367] | [1795..2036] |
|
|
4.0E-43 | [198..520] | [1059..1403] |
|
|
1.0E-39 | [227..511] | [21..304] |
|
|
2.0E-38 | [276..497] | [590..807] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MYHTHMHESL ISVTSTVSVS DASYAYARLT RRDDSDSSSS SASSTKNSKS AECTGSKQQC 60
61 QLPTDSSHST SVTVGVAVAV PVGVIIIVLA VILCIVYRRS KKEAEEDNDP DFEGDSEFLP 120
121 TMKDYSPGIN HLYSS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.658 | a.1.1 | Globin-like |
| View | Download | 0.546 | a.3.1 | Cytochrome c |
| View | Download | 0.699 | a.48.1 | N-terminal domain of cbl (N-cbl) |
| View | Download | 0.699 | a.48.1 | N-terminal domain of cbl (N-cbl) |
| View | Download | 0.658 | a.1.1 | Globin-like |
| View | Download | 0.591 | a.1.1 | Globin-like |
| View | Download | 0.591 | a.1.1 | Globin-like |
| View | Download | 0.547 | a.1.1 | Globin-like |
| View | Download | 0.546 | a.3.1 | Cytochrome c |
| View | Download | 0.483 | a.1.1 | Globin-like |
| View | Download | 0.465 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.457 | b.60.1 | Lipocalins |
| View | Download | 0.454 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.452 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.423 | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
| View | Download | 0.402 | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.389 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.389 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.387 | a.7.1 | Spectrin repeat |
| View | Download | 0.381 | a.118.1 | ARM repeat |
| View | Download | 0.379 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.376 | a.1.2 | alpha-helical ferredoxin |
| View | Download | 0.366 | a.19.1 | Fertilization protein |
| View | Download | 0.362 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.362 | a.48.1 | N-terminal domain of cbl (N-cbl) |
| View | Download | 0.361 | a.39.1 | EF-hand |
| View | Download | 0.361 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.359 | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.339 | a.1.1 | Globin-like |
| View | Download | 0.337 | a.2.3 | Chaperone J-domain |
| View | Download | 0.305 | a.29.2 | Bromodomain |
| View | Download | 0.295 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.283 | a.24.1 | Apolipoprotein |
| View | Download | 0.281 | a.26.1 | 4-helical cytokines |
| View | Download | 0.272 | b.88.1 | Mss4-like |
| View | Download | 0.267 | a.74.1 | Cyclin-like |
| View | Download | 0.260 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.259 | a.3.1 | Cytochrome c |
| View | Download | 0.253 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.247 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.245 | a.26.1 | 4-helical cytokines |
| View | Download | 0.244 | a.29.2 | Bromodomain |
| View | Download | 0.239 | a.24.12 | Outer surface protein C (OspC) |
| View | Download | 0.236 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.232 | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
| View | Download | 0.220 | a.39.1 | EF-hand |
| View | Download | 0.204 | a.26.1 | 4-helical cytokines |
|
Region A: Residues: [136-536] |
1 11 21 31 41 51
| | | | | |
1 DSQQDFMEKT LQQPPSDPFV GSMHSSKYNV RSATPPAIGR SWYVDPFQLP QESNDSNSLR 60
61 DFAMRVQEDG LGGYKVAAES RNASQTSLHP DNFSNCTPIR ASSRFQESES FRSHGSPIHN 120
121 NQLSRGSATE GANKQFTFPN EDNDSSSVSE EAEVLNESNE SASNDAFEFE LDNSSEKTHE 180
181 RNLRFGKDDD NYELQDIREA EHMNDRSSSK SQDDDYYVSL LSPNEEEDIK RMKSIYQVYL 240
241 DRAKTMKKEE DKADNANDIS QEENRVDNIV QNPLPSIKIN NNDNIDNNEV PEAKHLVKEA 300
301 LPLNNTNLAE YGPEMAQSQK QYPVQDTLTV NDTEAAPSNR IASSIYSEAI QPLNYQDQYQ 360
361 QQEQSPVYNG HTQYPGNGYS GNPQQQGYTA QFVQNPQWYG V
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [537-734] |
1 11 21 31 41 51
| | | | | |
1 PTPQQQQHNH PQTLETIGEL PTPAYLAQSA SSHSLTSFKR PNKQQLLQLQ TARLNGTALN 60
61 PVDHPEMFYS PTNDAYYAPQ QQGQYMKFNE NGAVPSPYQL RQSVVMTNPS DLTAKPSYKP 120
121 AGSFRSVSAT NSRNNSLTTQ NNIYLQQQQQ QLYNSRVSGI LEETDVVQPP SVGGILPHSG 180
181 SQDDLRKQLG SSHNYTVN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [512-734] |
1 11 21 31 41 51
| | | | | |
1 NGYSGNPQQQ GYTAQFVQNP QWYGVPTPQQ QQHNHPQTLE TIGELPTPAY LAQSASSHSL 60
61 TSFKRPNKQQ LLQLQTARLN GTALNPVDHP EMFYSPTNDA YYAPQQQGQY MKFNENGAVP 120
121 SPYQLRQSVV MTNPSDLTAK PSYKPAGSFR SVSATNSRNN SLTTQNNIYL QQQQQQLYNS 180
181 RVSGILEETD VVQPPSVGGI LPHSGSQDDL RKQLGSSHNY TVN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
