| Protein: | DCD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 312 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DCD1.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..312] | [1..312] |
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2.0E-75 | [32..305] | [51..344] |
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2.0E-45 | [112..305] | [6..200] |
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4.0E-41 | [158..305] | [1..143] |
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2.0E-39 | [155..312] | [1..160] |
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3.0E-39 | [158..305] | [1..143] |
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7.0E-39 | [158..306] | [1..144] |
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8.0E-39 | [158..310] | [1..155] |
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1.0E-38 | [155..312] | [1..160] |
|
Region A: Residues: [1-111] |
1 11 21 31 41 51
| | | | | |
1 MLIGVSGTKF CGCEDVINML VDHFHFELLN HLDNPEEILD YATKNYTKNS VIFLEKLSLL 60
61 EKLEKRPFFV HLSIDAPVTT RVALYRKTTQ AESLSLEQII QAIDQHDFQP E
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.793 | c.23.1 | CheY-like |
| View | Download | 0.723 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.657 | c.57.1 | Molybdenum cofactor biosynthesis proteins |
| View | Download | 0.657 | c.51.3 | B12-dependend dehydatases associated subunit |
| View | Download | 0.663 | c.23.1 | CheY-like |
| View | Download | 0.626 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.617 | c.53.1 | Resolvase-like |
| View | Download | 0.602 | c.23.6 | Cobalamin (vitamin B12)-binding domain |
| View | Download | 0.577 | c.23.1 | CheY-like |
| View | Download | 0.555 | c.23.12 | Formate/glycerate dehydrogenase catalytic domain-like |
| View | Download | 0.544 | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.535 | c.23.16 | Class I glutamine amidotransferase-like |
| View | Download | 0.535 | c.23.12 | Formate/glycerate dehydrogenase catalytic domain-like |
| View | Download | 0.526 | c.44.2 | Enzyme IIB-cellobiose |
| View | Download | 0.518 | c.23.12 | Formate/glycerate dehydrogenase catalytic domain-like |
| View | Download | 0.507 | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.502 | c.16.1 | Lumazine synthase |
| View | Download | 0.501 | c.23.6 | Cobalamin (vitamin B12)-binding domain |
| View | Download | 0.497 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.471 | c.26.1 | Nucleotidylyl transferase |
| View | Download | 0.466 | c.23.1 | CheY-like |
| View | Download | 0.455 | c.36.1 | Thiamin diphosphate-binding fold (THDP-binding) |
| View | Download | 0.443 | c.47.1 | Thioredoxin-like |
| View | Download | 0.430 | c.23.1 | CheY-like |
| View | Download | 0.429 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.425 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.422 | d.74.4 | Prokaryotic AspRS, insert domain |
| View | Download | 0.413 | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.406 | b.60.1 | Lipocalins |
| View | Download | 0.399 | c.47.1 | Thioredoxin-like |
| View | Download | 0.397 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.393 | c.23.1 | CheY-like |
| View | Download | 0.367 | c.121.1 | Ribose/Galactose isomerase RpiB/AlsB |
| View | Download | 0.367 | c.15.1 | BRCT domain |
| View | Download | 0.357 | c.20.1 | Initiation factor IF2/eIF5b, domain 3 |
| View | Download | 0.355 | c.23.1 | CheY-like |
| View | Download | 0.350 | c.47.1 | Thioredoxin-like |
| View | Download | 0.346 | c.47.1 | Thioredoxin-like |
| View | Download | 0.345 | d.58.48 | MTH1187-like |
| View | Download | 0.334 | c.116.1 | alpha/beta knot |
| View | Download | 0.333 | c.8.6 | Swiveling domain of the glycerol dehydratase reactivase alpha subunit |
| View | Download | 0.328 | c.48.1 | TK C-terminal domain-like |
| View | Download | 0.325 | c.23.13 | Type II 3-dehydroquinate dehydratase |
| View | Download | 0.306 | c.47.1 | Thioredoxin-like |
| View | Download | 0.299 | c.50.1 | Macro domain-like |
| View | Download | 0.290 | c.47.1 | Thioredoxin-like |
| View | Download | 0.287 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.283 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.282 | d.58.5 | GlnB-like |
| View | Download | 0.278 | c.57.1 | Molybdenum cofactor biosynthesis proteins |
| View | Download | 0.271 | c.36.1 | Thiamin diphosphate-binding fold (THDP-binding) |
| View | Download | 0.263 | c.24.1 | Methylglyoxal synthase-like |
| View | Download | 0.259 | c.23.4 | Succinyl-CoA synthetase domains |
| View | Download | 0.258 | c.54.1 | IIA domain of mannose transporter, IIA-Man |
| View | Download | 0.252 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.251 | c.24.1 | Methylglyoxal synthase-like |
| View | Download | 0.245 | c.25.1 | Ferredoxin reductase-like, C-terminal NADP-linked domain |
| View | Download | 0.245 | c.36.1 | Thiamin diphosphate-binding fold (THDP-binding) |
| View | Download | 0.242 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.236 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.233 | c.23.5 | Flavoproteins |
| View | Download | 0.232 | c.26.1 | Nucleotidylyl transferase |
| View | Download | 0.226 | c.48.1 | TK C-terminal domain-like |
| View | Download | 0.226 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.226 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.224 | c.48.1 | TK C-terminal domain-like |
| View | Download | 0.221 | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.213 | c.26.1 | Nucleotidylyl transferase |
| View | Download | 0.203 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.202 | c.45.1 | (Phosphotyrosine protein) phosphatases II |
| View | Download | 0.202 | c.25.1 | Ferredoxin reductase-like, C-terminal NADP-linked domain |
| Term | Confidence | Notes |
| binding | 1.71761116975383 | bayes_pls_golite062009 |
| catalytic activity | 0.942640875796745 | bayes_pls_golite062009 |
| hydrolase activity | 0.799258945993812 | bayes_pls_golite062009 |
| protein binding | 0.262528335081572 | bayes_pls_golite062009 |
| hydrogen ion transporting ATP synthase activity, rotational mechanism | 0.205823354338506 | bayes_pls_golite062009 |
| nucleic acid binding | 0.18803512517078 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.144773327806905 | bayes_pls_golite062009 |
| nucleotide binding | 0.140809536790465 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.134373265505829 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.134362467171752 | bayes_pls_golite062009 |
|
Region A: Residues: [112-312] |
1 11 21 31 41 51
| | | | | |
1 GIKLREKSHL RFKIVNEDRR GRRQSLINNI TTQLKILDDK EKQMAPLMRP SWDSYFMKLA 60
61 TLAASRSNCM KRRVGCVIVR ECRVIATGYN GTPRHLTNCF NGGCPRCNDG DSRNLHTCLC 120
121 LHAEENALLE AGRDRVGQNA TLYCDTCPCL TCSVKIVQTG ISEVVYSQSY RMDEESFKVL 180
181 KNAGITVRQF SFTEEPRIVM I
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| Detection Method: | |
| Confidence: | 10.99 |
| Match: | 1jtkA |
| Description: | mono-domain cytidine deaminase |
Matching Structure (courtesy of the PDB): |
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