YRC Public Data Repository - Protein Structure Prediction

Protein:	YHR113W
Organism:	Saccharomyces cerevisiae
Length:	490 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHR113W.

Description	E-value	Query Range	Subject Range
gi\|190405892 - gi\|190405892\|gb\|EDV09159.1\| hypothetical protein SCRG_04826 [Saccharomyces cerevisiae RM11-1a] gi\|151944059 - gi\|151944059\|gb\|EDN62352.1\| aspartyl aminopeptidase [Saccharomyces cerevisiae YJM789] YHR113W - Cytoplasmic aspartyl aminopeptidase; cleaves unblocked N-terminal acidic amino acid residues from pe... DNPEP_YEAST - Aspartyl aminopeptidase 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APE4 PE=1 SV=1	0.0	[1..490]	[1..490]
DNPEP - aspartyl aminopeptidase	0.0	[19..490]	[18..474]
gi\|34905926, gi\|... - gi\|34905926\|ref\|NP_914310.1\| aspartyl aminopeptidase-like protein [Oryza sativa (japonica cultivar-g...	0.0	[11..490]	[57..524]
DNPEP_SCHPO - Aspartyl aminopeptidase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=aap1 PE=1 SV=1 SPAC4F10.02 - aminopeptidase	0.0	[8..490]	[2..465]
gi\|7413533, gi\|1... - gi\|9758446\|dbj\|BAB08975.1\| aspartyl aminopeptidase [Arabidopsis thaliana], gi\|7413533\|emb\|CAB86013.1...	0.0	[16..490]	[64..524]
gi\|16226017, gi\|... - gi\|16226017\|gb\|AAL16055.1\|AF420304_1 aspartyl aminopeptidase [Coccidioides immitis], gi\|16225946\|gb\|...	0.0	[21..490]	[10..494]
CE01235 - status:Confirmed UniProt:Q19087 protein_id:AAC46643.1	0.0	[19..488]	[16..469]

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Predicted Domain #1

Region A:
Residues: [1-490]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRIQLRTMS SKTCKSDYPK EFVSFLNSSH SPYHTVHNIK KHLVSNGFKE LSERDSWAGH  60
   61 VAQKGKYFVT RNGSSIIAFA VGGKWEPGNP IAITGAHTDS PALRIKPISK RVSEKYLQVG 120
  121 VETYGGAIWH SWFDKDLGVA GRVFVKDAKT GKSIARLVDL NRPLLKIPTL AIHLDRDVNQ 180
  181 KFEFNRETQL LPIGGLQEDK TEAKTEKEIN NGEFTSIKTI VQRHHAELLG LIAKELAIDT 240
  241 IEDIEDFELI LYDHNASTLG GFNDEFVFSG RLDNLTSCFT SMHGLTLAAD TEIDRESGIR 300
  301 LMACFDHEEI GSSSAQGADS NFLPNILERL SILKGDGSDQ TKPLFHSAIL ETSAKSFFLS 360
  361 SDVAHAVHPN YANKYESQHK PLLGGGPVIK INANQRYMTN SPGLVLVKRL AEAAKVPLQL 420
  421 FVVANDSPCG STIGPILASK TGIRTLDLGN PVLSMHSIRE TGGSADLEFQ IKLFKEFFER 480
  481 YTSIESEIVV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	300.366532
Match:	PF02127
Description:	Aminopeptidase I zinc metalloprotease (M18)

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits