YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: GGA2
Organism: Saccharomyces cerevisiae
Length: 585 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GGA2.

Description E-value Query
Range
Subject
Range
GGA2 - Golgi-localized protein with homology to gamma-adaptin, interacts with and regulates Arf1p and Arf2p...
GGA2_YEAST - ADP-ribosylation factor-binding protein GGA2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c...
gi|207344617 - gi|207344617|gb|EDZ71705.1| YHR108Wp-like protein [Saccharomyces cerevisiae AWRI1631]
0.0 [1..585] [1..585]
GGA2 - golgi-associated, gamma adaptin ear containing, ARF binding protein 2
0.0 [5..585] [6..607]
gi|12835938 - gi|12835938|dbj|BAB23426.1| unnamed protein product [Mus musculus]
0.0 [14..585] [17..597]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [49..583] [3..601]
YB0G_SCHPO - Probable ADP-ribosylation factor-binding protein C25H2.16c OS=Schizosaccharomyces pombe (strain 972 ...
SPBC25H2.16c - adaptin
0.0 [29..582] [11..530]

Back

Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHPHSHSIY LSELPVRKPQ ALGNPLLRKI QRACRMSLAE PDLALNLDIA DYINEKQGAA  60
   61 PRDAAIALAK LINNRESHVA IFALSLLDVL VKNCGY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 177.626727
Match: 1elkA_
Description: Tom1 protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [97-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFHLQISRKE FLNELVKRFP GHPPLRYSKI QRLILTAIEE WYQTICKHSS YKNDMGYIRD  60
   61 MHRLLKYKGY AFPKISESDL AVLKPSNQLK TASEIQKEQE 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 177.626727
Match: 1elkA_
Description: Tom1 protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
clathrin binding 5.9355718186759 bayes_pls_golite062009
binding 2.36215929275587 bayes_pls_golite062009
phosphoinositide binding 1.69886980741044 bayes_pls_golite062009
protein binding 1.55859524125292 bayes_pls_golite062009
phospholipid binding 1.35873451348399 bayes_pls_golite062009
lipid binding 0.681936854618139 bayes_pls_golite062009
phosphatidylinositol-4,5-bisphosphate binding 0.2359206178887 bayes_pls_golite062009
phosphatidylinositol binding 0.10007172207713 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [197-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IAQAAKLEEL IRRGKPEDLR EANKLMKIMA GFKEDNAVQA KQAISSELNK LKRKADLLNE  60
   61 MLESPDSQNW DNETTQELHS ALKVAQPKFQ KIIEEEQEDD ALVQDLLKFN DTVNQLLEKF 120
  121 NLLKNGDSNA ASQIHPSHVS A

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 3.0
Match: PF03127
Description: GAT domain

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [338-445]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLQQSSGALT NEINLIDFND LDEAPSQGNN NTNGTGTPAA AETSVNDLLG DLTDLSISNP  60
   61 STANQASFGL GGDIVLGSSQ PAPPVTTTNN SNNTLDLLGL STPQSPTN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted functions:

Term Confidence Notes
binding 1.93554535044651 bayes_pls_golite062009
protein binding 1.17960228368657 bayes_pls_golite062009
transporter activity 0.169557557237959 bayes_pls_golite062009

Predicted Domain #5
Region A:
Residues: [446-585]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQAVNSSGFD LLMGFNPTTG TTTAPARTLV NQSPNLKIEF EISRESNSVI RIKSFFTNLS  60
   61 SSPISNLVFL LAVPKSMSLK LQPQSSNFMI GNAKDGISQE GTIENAPANP SKALKVKWKV 120
  121 NYSVNSTQAE ETAVFTLPNV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.522879
Match: 1iu1A_
Description: Gamma1-adaptin domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle