| Protein: | GGA2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 585 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GGA2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..585] | [1..585] |
|
|
0.0 | [5..585] | [6..607] |
|
|
0.0 | [14..585] | [17..597] |
|
|
0.0 | [49..583] | [3..601] |
|
|
0.0 | [29..582] | [11..530] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MSHPHSHSIY LSELPVRKPQ ALGNPLLRKI QRACRMSLAE PDLALNLDIA DYINEKQGAA 60
61 PRDAAIALAK LINNRESHVA IFALSLLDVL VKNCGY
|
| Detection Method: |  |
| Confidence: | 177.626727 |
| Match: | 1elkA_ |
| Description: | Tom1 protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [97-196] |
1 11 21 31 41 51
| | | | | |
1 PFHLQISRKE FLNELVKRFP GHPPLRYSKI QRLILTAIEE WYQTICKHSS YKNDMGYIRD 60
61 MHRLLKYKGY AFPKISESDL AVLKPSNQLK TASEIQKEQE
|
| Detection Method: | |
| Confidence: | 177.626727 |
| Match: | 1elkA_ |
| Description: | Tom1 protein |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| clathrin binding | 5.9355718186759 | bayes_pls_golite062009 |
| binding | 2.36215929275587 | bayes_pls_golite062009 |
| phosphoinositide binding | 1.69886980741044 | bayes_pls_golite062009 |
| protein binding | 1.55859524125292 | bayes_pls_golite062009 |
| phospholipid binding | 1.35873451348399 | bayes_pls_golite062009 |
| lipid binding | 0.681936854618139 | bayes_pls_golite062009 |
| phosphatidylinositol-4,5-bisphosphate binding | 0.2359206178887 | bayes_pls_golite062009 |
| phosphatidylinositol binding | 0.10007172207713 | bayes_pls_golite062009 |
|
Region A: Residues: [197-337] |
1 11 21 31 41 51
| | | | | |
1 IAQAAKLEEL IRRGKPEDLR EANKLMKIMA GFKEDNAVQA KQAISSELNK LKRKADLLNE 60
61 MLESPDSQNW DNETTQELHS ALKVAQPKFQ KIIEEEQEDD ALVQDLLKFN DTVNQLLEKF 120
121 NLLKNGDSNA ASQIHPSHVS A
|
| Detection Method: | |
| Confidence: | 3.0 |
| Match: | PF03127 |
| Description: | GAT domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [338-445] |
1 11 21 31 41 51
| | | | | |
1 PLQQSSGALT NEINLIDFND LDEAPSQGNN NTNGTGTPAA AETSVNDLLG DLTDLSISNP 60
61 STANQASFGL GGDIVLGSSQ PAPPVTTTNN SNNTLDLLGL STPQSPTN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 1.93554535044651 | bayes_pls_golite062009 |
| protein binding | 1.17960228368657 | bayes_pls_golite062009 |
| transporter activity | 0.169557557237959 | bayes_pls_golite062009 |
|
Region A: Residues: [446-585] |
1 11 21 31 41 51
| | | | | |
1 SQAVNSSGFD LLMGFNPTTG TTTAPARTLV NQSPNLKIEF EISRESNSVI RIKSFFTNLS 60
61 SSPISNLVFL LAVPKSMSLK LQPQSSNFMI GNAKDGISQE GTIENAPANP SKALKVKWKV 120
121 NYSVNSTQAE ETAVFTLPNV
|
| Detection Method: | |
| Confidence: | 36.522879 |
| Match: | 1iu1A_ |
| Description: | Gamma1-adaptin domain |
Matching Structure (courtesy of the PDB): |
|
