| Protein: | RPF1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 295 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPF1.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-81 | [1..295] | [1..295] |
|
|
5.0E-81 | [6..295] | [47..333] |
|
|
3.0E-77 | [7..295] | [2..288] |
|
|
2.0E-76 | [9..295] | [57..349] |
|
|
7.0E-73 | [9..295] | [39..343] |
|
|
2.0E-71 | [7..292] | [2..282] |
|
|
4.0E-71 | [7..295] | [2..283] |
|
Region A: Residues: [1-93] |
1 11 21 31 41 51
| | | | | |
1 MALGNEINIT NKLKRQEIFA DIKHEKNKER HTMRRKRAKE ERENPELREQ RLKENVTQTI 60
61 ENTRVYDETI NKEVEGDEDD LMRYFNSNSN EPP
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.317 | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.277 | a.4.2 | Methylated DNA-protein cysteine methyltransferase, C-terminal domain |
| View | Download | 0.317 | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.251 | a.130.1 | Chorismate mutase II |
| View | Download | 0.277 | a.4.2 | Methylated DNA-protein cysteine methyltransferase, C-terminal domain |
| View | Download | 0.251 | a.130.1 | Chorismate mutase II |
| View | Download | 0.271 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.271 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.277 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.277 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.206 | a.46.1 | Methionine synthase domain |
|
Region A: Residues: [94-295] |
1 11 21 31 41 51
| | | | | |
1 KIFLTTNVNA KKSAYEFANI LIEILPNVTF VKRKFGYKLK EISDICIKRN FTDIVIINED 60
61 KKKVTGLTFI HLPEGPTFYF KLSSFVEVKK IVGHGRPTSH IPELILNNFQ TRLGQTVGRL 120
121 FQSILPQNPD IEGRQVITLH NQRDYIFFRR HRYVFKDNER VGLQELGPQF TLKLKRLQRG 180
181 IKEETEWEHK PEMDKEKKKF YL
|
| Detection Method: | |
| Confidence: | 35.275724 |
| Match: | PF01945 |
| Description: | No description for PF01945 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| aminoacyl-tRNA ligase activity | 3.58650371779212 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 3.58624422951947 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 3.58624422951947 | bayes_pls_golite062009 |
| ligase activity | 2.44518871945794 | bayes_pls_golite062009 |
| proline-tRNA ligase activity | 2.35871952544841 | bayes_pls_golite062009 |
| binding | 1.78917266819015 | bayes_pls_golite062009 |
| catalytic activity | 0.902495165806215 | bayes_pls_golite062009 |
| protein binding | 0.665778090365515 | bayes_pls_golite062009 |
|
Region A: Residues: [185-295] |
1 11 21 31 41 51
| | | | | |
1 VGHGRPTSHI PELILNNFQT RLGQTVGRLF QSILPQNPDI EGRQVITLHN QRDYIFFRRH 60
61 RYVFKDNERV GLQELGPQFT LKLKRLQRGI KEETEWEHKP EMDKEKKKFY L
|
| Detection Method: | |
| Confidence: | 1.61 |
| Match: | 2cxhA |
| Description: | Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1 |
Matching Structure (courtesy of the PDB): |
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