| Protein: | SSF1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 453 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSF1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..453] | [1..453] |
|
|
0.0 | [2..453] | [7..407] |
|
|
0.0 | [2..450] | [7..403] |
|
|
0.0 | [16..428] | [2..372] |
|
|
0.0 | [26..428] | [1..361] |
|
|
0.0 | [3..423] | [6..361] |
|
|
3.0E-99 | [1..357] | [17..304] |
|
|
4.0E-14 | [385..452] | [54..118] |
|
Region A: Residues: [1-294] |
1 11 21 31 41 51
| | | | | |
1 MAKRRQKKRT HAQLTPEQEQ GIPKSMVIRV GQTSLANHSL NQLVKDFRQI MQPHTAIKLK 60
61 ERKSNKLKDF VVMCGPLGVT HLFMFTQSEK TGNVSLKIAR TPQGPTVTFQ VLDYSLGRDI 120
121 KKFLKRPKSL NNDDVLNPPL LVLNGFSTSK RSGEDDQDVN VEKVIVSMFQ NIFPPLNPAR 180
181 TSLNSIKRVF MINKDRETGE ISMRHYFIDI REVEISRNLK RLYKAKNNLS KTVPNLHRKE 240
241 DISSLILDHD LGAYTSESEI EDDAIVRVVD NQDVKAKHSQ SLKSQRTPVE KKDN
|
| Detection Method: |  |
| Confidence: | 172.79588 |
| Match: | PF03877 |
| Description: | No description for PF03877 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 1.74559657602427 | bayes_pls_golite062009 |
| protein binding | 0.360840654168616 | bayes_pls_golite062009 |
|
Region A: Residues: [295-372] |
1 11 21 31 41 51
| | | | | |
1 KEREKETEEE DVEMEEPKPS ENLQPTPRKK AIKLTELGPR LTLKLVKIEE GICSGKVLHH 60
61 EFVQKSSEEI KALEKRHA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.820 | 0.148 | rRNA binding | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.529 | 0.148 | rRNA binding | b.34.5 | Translation proteins SH3-like domain |
| View | Download | 0.554 | 0.148 | rRNA binding | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.522 | 0.148 | rRNA binding | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.502 | 0.148 | rRNA binding | d.204.1 | Ribosome binding protein Y (YfiA homologue) |
| View | Download | 0.451 | 0.148 | rRNA binding | c.51.2 | TolB, N-terminal domain |
| View | Download | 0.398 | 0.148 | rRNA binding | d.93.1 | SH2 domain |
| View | Download | 0.374 | 0.148 | rRNA binding | d.17.5 | Uracil-DNA glycosylase inhibitor protein |
| View | Download | 0.355 | 0.148 | rRNA binding | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.305 | 0.148 | rRNA binding | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.293 | 0.148 | rRNA binding | d.17.1 | Cystatin/monellin |
| View | Download | 0.290 | 0.148 | rRNA binding | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.278 | 0.148 | rRNA binding | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.273 | 0.148 | rRNA binding | d.17.1 | Cystatin/monellin |
| View | Download | 0.269 | 0.148 | rRNA binding | d.93.1 | SH2 domain |
| View | Download | 0.223 | 0.148 | rRNA binding | g.18.1 | Complement control module/SCR domain |
|
Region A: Residues: [373-453] |
1 11 21 31 41 51
| | | | | |
1 AKMRLKEQRK KEQEENIAKK KAVKDAKKQR KLERRKARAA EGGEGQGKDD AMSDDESSSS 60
61 DSEHYGSVPE DLDSDLFSEV E
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.388 | 0.035 | ribosomal large subunit assembly | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.527 | 0.016 | ribosomal large subunit assembly | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.312 | 0.009 | ribosomal large subunit assembly | a.17.1 | p8-MTCP1 |
| View | Download | 0.409 | N/A | N/A | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.297 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.264 | N/A | N/A | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.250 | N/A | N/A | a.11.1 | Acyl-CoA binding protein |
| View | Download | 0.238 | N/A | N/A | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.214 | N/A | N/A | a.59.1 | PAH2 domain |
| View | Download | 0.210 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.205 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.205 | N/A | N/A | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
