| Protein: | RPP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 293 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPP1.
| Description | E-value | Query Range |
Subject Range |
|
|
6.0E-95 | [1..293] | [1..293] |
|
|
2.0E-73 | [21..259] | [16..256] |
|
|
6.0E-73 | [1..247] | [1..231] |
|
|
8.0E-73 | [2..268] | [7..266] |
|
|
7.0E-64 | [31..247] | [5..212] |
|
|
7.0E-59 | [7..284] | [25..353] |
|
|
6.0E-50 | [2..245] | [10..237] |
|
|
7.0E-47 | [47..233] | [14..208] |
|
|
2.0E-45 | [43..233] | [10..207] |
|
|
9.0E-42 | [62..239] | [35..211] |
|
Region A: Residues: [1-61] |
1 11 21 31 41 51
| | | | | |
1 MLVDLNVPWP QNSYADKVTS QAVNNLIKTL STLHMLGYTH IAINFTVNHS EKFPNDVKLL 60
61 N
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.463 | d.80.1 | Tautomerase/MIF |
| View | Download | 0.348 | d.88.1 | SRF-like |
| View | Download | 0.351 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.709 | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.352 | a.112.1 | Description not found. |
| View | Download | 0.322 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.315 | d.88.1 | SRF-like |
| View | Download | 0.314 | d.71.1 | Cell division protein MinE topological specificity domain |
| View | Download | 0.308 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.300 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.300 | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.284 | d.88.1 | SRF-like |
| View | Download | 0.275 | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.262 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.257 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.249 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.239 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.228 | d.88.1 | SRF-like |
| View | Download | 0.228 | d.88.1 | SRF-like |
| View | Download | 0.209 | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.209 | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.208 | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.207 | b.40.2 | Bacterial enterotoxins |
|
Region A: Residues: [62-293] |
1 11 21 31 41 51
| | | | | |
1 PIDIKRRFGE LMDRTGLKLY SRITLIIDDP SKGQSLSKIS QAFDIVAALP ISEKGLTLST 60
61 TNLDIDLLTF QYGSRLPTFL KHKSICSCVN RGVKLEIVYG YALRDVQARR QFVSNVRSVI 120
121 RSSRSRGIVI GSGAMSPLEC RNILGVTSLI KNLGLPSDRC SKAMGDLASL VLLNGRLRNK 180
181 SHKQTIVTGG GSGNGDDVVN DVQGIDDVQT IKVVKRSMDA EQLGHASKRH KP
|
| Detection Method: | |
| Confidence: | 62.823909 |
| Match: | PF01876 |
| Description: | RNase P subunit p30 |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
