| Protein: | SMF2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 549 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMF2.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..549] | [1..549] |
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0.0 | [5..463] | [11..466] |
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0.0 | [2..463] | [15..472] |
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0.0 | [2..463] | [15..472] |
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0.0 | [1..463] | [24..481] |
|
Region A: Residues: [1-75] |
1 11 21 31 41 51
| | | | | |
1 MTSQEYEPIQ WSDESQTNND SVNDAYADVN TTHESRRRTT LQPNSTSQSM IGTLRKYARF 60
61 IGPGLMVSVS YMDPG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.418 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.507 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.524 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.478 | a.46.1 | Methionine synthase domain |
| View | Download | 0.458 | g.2.2 | Neurotoxin B-IV |
| View | Download | 0.389 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.380 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.372 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.368 | d.58.17 | Metal-binding domain |
| View | Download | 0.356 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.320 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.310 | a.3.1 | Cytochrome c |
| View | Download | 0.309 | a.2.7 | tRNA-binding arm |
| View | Download | 0.307 | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.307 | a.30.1 | ROP protein |
| View | Download | 0.306 | d.58.48 | MTH1187-like |
| View | Download | 0.276 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.275 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.263 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.259 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.258 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.255 | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.253 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.249 | a.2.7 | tRNA-binding arm |
| View | Download | 0.246 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.246 | a.65.1 | Annexin |
| View | Download | 0.244 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.240 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.236 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.232 | d.58.49 | YajQ-like |
| View | Download | 0.230 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.229 | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.229 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.222 | d.58.25 | Killer toxin KP6 alpha-subunit |
| View | Download | 0.221 | c.23.12 | Formate/glycerate dehydrogenase catalytic domain-like |
| View | Download | 0.220 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.219 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.219 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.216 | d.58.5 | GlnB-like |
| View | Download | 0.215 | a.112.1 | Description not found. |
| View | Download | 0.214 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.213 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.209 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.204 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.202 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.201 | a.4.1 | Homeodomain-like |
| View | Download | 0.201 | a.118.8 | TPR-like |
|
Region A: Residues: [76-495] |
1 11 21 31 41 51
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1 NYSTAVAAGS AHRYKLLFSV LVSNFMAAFW QYLCARLGAV TGLDLAQNCK KHLPFGLNIT 60
61 LYILAEMAII ATDLAEVVGT AISLNILFHI PLALGVILTV VDVLIVLLAY KPNGSMKGIR 120
121 IFEAFVSLLV VLTVVCFTVE LFYAKLGPAK EIFSGFLPSK AVFEGDGLYL SLAILGATVM 180
181 PHSLYLGSGV VQPRLREYDI KNGHYLPDAN DMDNNHDNYR PSYEAISETL HFTITELLIS 240
241 LFTVALFVNC AILIVSGATL YGSTQNAEEA DLFSIYNLLC STLSKGAGTV FVLALLFSGQ 300
301 SAGIVCTLSG QMVSEGFLNW TVSPALRRSA TRAVAITPCL ILVLVAGRSG LSGALNASQV 360
361 VLSLLLPFVS APLLYFTSSK KIMRVQLNRT KELSRTTDKK PVADRTEDDE TIELEEMGIG 420
421
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| Detection Method: | |
| Confidence: | 242.886057 |
| Match: | PF01566 |
| Description: | Natural resistance-associated macrophage protein |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [496-549] |
1 11 21 31 41 51
| | | | | |
1 SSSQERSLVS PAPEYKDMSN GMIVTVLAII VWLIISGLNF YMLLGFTTGK EVHL
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.508 | a.4.1 | Homeodomain-like |
| View | Download | 0.358 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.334 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.295 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.270 | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.267 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.217 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.207 | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.204 | d.15.7 | Immunoglobulin-binding domains |
