YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SPO13
Organism: Saccharomyces cerevisiae
Length: 291 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPO13.

Description E-value Query
Range
Subject
Range
gi|151943956 - gi|151943956|gb|EDN62249.1| sporulation protein [Saccharomyces cerevisiae YJM789]
SPO13_YEAST - Meiosis-specific protein SPO13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPO13 PE=...
SPO13 - Meiosis-specific protein, involved in maintaining sister chromatid cohesion during meiosis I as well...
0.0 [1..291] [1..291]
gi|17426715 - gi|17426715|emb|CAC87102.1| putative meiosis-specific protein [Saccharomyces uvarum]
gi|17426715 - gi|17426715|emb|CAC87102.1| putative meiosis-specific protein [Saccharomyces uvarum]
0.0 [1..290] [1..297]

Back

Predicted Domain #1
Region A:
Residues: [1-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPRKRFRLL ELGSPTHSKR KVQKPLQEKT PNLRVSPLAF KIGKEIKNKE IRKTKKTESE  60
   61 NIFNSKHVDL RLESPHPGLN FVSDAQQYSK AGDVRYLKNK SSNTLKNERQ TIERPSFDNS 120
  121 LRFEDIEQPP KSTSTPVLSQ SSQINVEREA PMFPVPYYIA PSPMYNFSPY QNFVGNPTFL 180
  181 TPSHNPNLNY AIPIQRPELL YPNVNVYDSP LFKKTRLPHQ TKSLDKEKNY QYLPIYPVSI 240
  241 SNNGDFVGQE TPRAAPKLSK KRLSNTLDVN CSDYESSGQN ATYNDSESSL N

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle