| Protein: | RPL8A |
| Organism: | Saccharomyces cerevisiae |
| Length: | 256 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL8A.
| Description | E-value | Query Range |
Subject Range |
|
|
9.0E-98 | [2..253] | [7..257] |
|
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1.0E-97 | [2..253] | [7..257] |
|
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2.0E-96 | [2..253] | [7..257] |
|
|
1.0E-93 | [2..253] | [7..257] |
|
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1.0E-93 | [2..253] | [7..257] |
|
|
9.0E-80 | [5..253] | [15..262] |
|
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5.0E-79 | [1..256] | [1..256] |
|
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8.0E-79 | [5..256] | [15..268] |
|
Region A: Residues: [1-82] |
1 11 21 31 41 51
| | | | | |
1 MAPGKKVAPA PFGAKSTKSN KTRNPLTHST PKNFGIGQAV QPKRNLSRYV KWPEYVRVQR 60
61 QKKILSIRLK VPPTIAQFQY TL
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.628 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.435 | N/A | N/A | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.560 | N/A | N/A | d.68.3 | SirA-like |
| View | Download | 0.521 | N/A | N/A | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.632 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.628 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.560 | N/A | N/A | d.68.3 | SirA-like |
| View | Download | 0.529 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.529 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.521 | N/A | N/A | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.426 | N/A | N/A | d.201.1 | SRP19 |
| View | Download | 0.369 | N/A | N/A | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.354 | N/A | N/A | d.206.1 | YggU-like |
| View | Download | 0.333 | N/A | N/A | a.156.1 | S13-like H2TH domain |
| View | Download | 0.300 | N/A | N/A | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.286 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.281 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.276 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.268 | N/A | N/A | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.263 | N/A | N/A | b.1.1 | Immunoglobulin |
| View | Download | 0.261 | N/A | N/A | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.260 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.260 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.259 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.252 | N/A | N/A | d.41.2 | Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain |
| View | Download | 0.246 | N/A | N/A | b.1.1 | Immunoglobulin |
| View | Download | 0.243 | N/A | N/A | b.1.1 | Immunoglobulin |
| View | Download | 0.225 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.214 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.206 | N/A | N/A | b.1.1 | Immunoglobulin |
| View | Download | 0.203 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [83-256] |
1 11 21 31 41 51
| | | | | |
1 DRNTAAETFK LFNKYRPETA AEKKERLTKE AAAVAEGKSK QDASPKPYAV KYGLNHVVAL 60
61 IENKKAKLVL IANDVDPIEL VVFLPALCKK MGVPYAIVKG KARLGTLVNQ KTSAVAALTE 120
121 VRAEDEAALA KLVSTIDANF ADKYDEVKKH WGGGILGNKA QAKMDKRAKN SDSA
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| Detection Method: | |
| Confidence: | 536.70927 |
| Match: | 1k5yG_ |
| Description: | No description for 1k5yG_ was found. |
