| Protein: | SPO11 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 398 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPO11.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..398] | [1..398] |
|
|
0.0 | [35..390] | [36..373] |
|
|
0.0 | [41..397] | [43..380] |
|
|
2.0E-99 | [42..397] | [10..345] |
|
Region A: Residues: [1-95] |
1 11 21 31 41 51
| | | | | |
1 MALEGLRKKY KTRQELVKAL TPKRRSIHLN SNGHSNGTPC SNADVLAHIK HFLSLAANSL 60
61 EQHQQPISIV FQNKKKKGDT SSPDIHTTLD FPLNG
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [96-170] |
1 11 21 31 41 51
| | | | | |
1 PHLCTHQFKL KRCAILLNLL KVVMEKLPLG KNTTVRDIFY SNVELFQRQA NVVQWLDVIR 60
61 FNFKLSPRKS LNIIP
|
| Detection Method: | |
| Confidence: | 72.522879 |
| Match: | 1d3yA_ |
| Description: | DNA topoisomerase IV, alpha subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [171-285] |
1 11 21 31 41 51
| | | | | |
1 AQKGLVYSPF PIDIYDNILT CENEPKMQKQ TIFPGKPCLI PFFQDDAVIK LGTTSMCNIV 60
61 IVEKEAVFTK LVNNYHKLST NTMLITGKGF PDFLTRLFLK KLEQYCSKLI SDCSI
|
|
Region B: Residues: [298-319] |
1 11 21 31 41 51
| | | | | |
1 LNYTHSNERN AYICTMANYK GI
|
| Detection Method: | |
| Confidence: | 72.522879 |
| Match: | 1d3yA_ |
| Description: | DNA topoisomerase IV, alpha subunit |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [286-297] |
1 11 21 31 41 51
| | | | | |
1 FTDADPYGIS IA
|
|
Region B: Residues: [320-398] |
1 11 21 31 41 51
| | | | | |
1 RITQVLAQNN EVHNKSIQLL SLNQRDYSLA KNLIASLTAN SWDIATSPLK NVIIECQREI 60
61 FFQKKAEMNE IDARIFEYK
|
| Detection Method: | |
| Confidence: | 72.522879 |
| Match: | 1d3yA_ |
| Description: | DNA topoisomerase IV, alpha subunit |
| Matching Structure (courtesy of the PDB): |
|
