| Protein: | SPO11 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 398 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPO11.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..398] | [1..398] |
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|
0.0 | [35..390] | [36..373] |
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0.0 | [41..397] | [43..380] |
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2.0E-99 | [42..397] | [10..345] |
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Region A: Residues: [1-95] |
1 11 21 31 41 51
| | | | | |
1 MALEGLRKKY KTRQELVKAL TPKRRSIHLN SNGHSNGTPC SNADVLAHIK HFLSLAANSL 60
61 EQHQQPISIV FQNKKKKGDT SSPDIHTTLD FPLNG
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.356 | 0.285 | endodeoxyribonuclease activity, producing 3'-phosphomonoesters | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.347 | 0.040 | endodeoxyribonuclease activity, producing 3'-phosphomonoesters | d.13.1 | HIT-like |
| View | Download | 0.399 | 0.023 | endodeoxyribonuclease activity, producing 3'-phosphomonoesters | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.569 | 0.022 | endodeoxyribonuclease activity, producing 3'-phosphomonoesters | d.58.48 | MTH1187-like |
| View | Download | 0.345 | N/A | N/A | d.58.16 | Poly(A) polymerase, C-terminal domain |
| View | Download | 0.338 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.337 | N/A | N/A | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.334 | N/A | N/A | f.16.1 | Gated mechanosensitive channel |
| View | Download | 0.318 | N/A | N/A | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.300 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.271 | N/A | N/A | d.13.1 | HIT-like |
| View | Download | 0.269 | N/A | N/A | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.261 | N/A | N/A | c.84.1 | Phosphoglucomutase, first 3 domains |
| View | Download | 0.261 | N/A | N/A | c.95.1 | Thiolase-like |
| View | Download | 0.259 | N/A | N/A | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.253 | N/A | N/A | c.16.1 | Lumazine synthase |
| View | Download | 0.248 | N/A | N/A | d.79.3 | L30e-like |
| View | Download | 0.237 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.228 | N/A | N/A | d.58.5 | GlnB-like |
| View | Download | 0.223 | N/A | N/A | a.151.1 | Glutamyl tRNA-reductase dimerization domain |
| View | Download | 0.219 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.218 | N/A | N/A | d.58.21 | Molybdenum cofactor biosynthesis protein C, MoaC |
| View | Download | 0.214 | N/A | N/A | a.28.1 | ACP-like |
| View | Download | 0.210 | N/A | N/A | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.205 | N/A | N/A | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.204 | N/A | N/A | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.202 | N/A | N/A | d.15.1 | Ubiquitin-like |
|
Region A: Residues: [96-170] |
1 11 21 31 41 51
| | | | | |
1 PHLCTHQFKL KRCAILLNLL KVVMEKLPLG KNTTVRDIFY SNVELFQRQA NVVQWLDVIR 60
61 FNFKLSPRKS LNIIP
|
| Detection Method: | |
| Confidence: | 72.522879 |
| Match: | 1d3yA_ |
| Description: | DNA topoisomerase IV, alpha subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [171-285] |
1 11 21 31 41 51
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1 AQKGLVYSPF PIDIYDNILT CENEPKMQKQ TIFPGKPCLI PFFQDDAVIK LGTTSMCNIV 60
61 IVEKEAVFTK LVNNYHKLST NTMLITGKGF PDFLTRLFLK KLEQYCSKLI SDCSI
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|
Region B: Residues: [298-319] |
1 11 21 31 41 51
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1 LNYTHSNERN AYICTMANYK GI
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| Detection Method: | |
| Confidence: | 72.522879 |
| Match: | 1d3yA_ |
| Description: | DNA topoisomerase IV, alpha subunit |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [286-297] |
1 11 21 31 41 51
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1 FTDADPYGIS IA
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Region B: Residues: [320-398] |
1 11 21 31 41 51
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1 RITQVLAQNN EVHNKSIQLL SLNQRDYSLA KNLIASLTAN SWDIATSPLK NVIIECQREI 60
61 FFQKKAEMNE IDARIFEYK
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| Detection Method: | |
| Confidence: | 72.522879 |
| Match: | 1d3yA_ |
| Description: | DNA topoisomerase IV, alpha subunit |
| Matching Structure (courtesy of the PDB): |
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