| Protein: | YAP3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 330 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAP3.
| Description | E-value | Query Range |
Subject Range |
|
|
4.0E-75 | [1..330] | [1..330] |
|
|
4.0E-37 | [47..326] | [108..397] |
|
|
2.0E-33 | [146..310] | [176..337] |
|
|
3.0E-29 | [19..268] | [204..458] |
|
|
2.0E-28 | [19..268] | [204..458] |
|
Region A: Residues: [1-138] |
1 11 21 31 41 51
| | | | | |
1 MTPSNMDDNT SGFMKFINPQ CQEEDCCIRN SLFQEDSKCI KQQPDLLSEQ TAPFPILEDQ 60
61 CPALNLDRSN NDLLLQNNIS FPKGSDLQAI QLTPISGDYS TYVMADNNNN DNDSYSNTNY 120
121 FSKNNGISPS SRSPSVAH
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [139-245] |
1 11 21 31 41 51
| | | | | |
1 NENVPDDSKA KKKAQNRAAQ KAFRERKEAR MKELQDKLLE SERNRQSLLK EIEELRKANT 60
61 EINAENRLLL RSGNENFSKD IEDDTNYKYS FPTKDEFFTS MVLESKL
|
| Detection Method: | |
| Confidence: | 41.751666 |
| Match: | 1gd2E_ |
| Description: | PAP1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [246-330] |
1 11 21 31 41 51
| | | | | |
1 NHKGKYSLKD NEIMKRNTQY TDEAGRHVLT VPATWEYLYK LSEERDFDVT YVMSKLQGQE 60
61 CCHTHGPAYP RSLIDFLVEE ATLNE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.364 | 0.926 | regulation of transcription from RNA polymerase II promoter | a.4.5 | "Winged helix" DNA-binding domain |
