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View Structure Prediction Details

Protein: CPD1
Organism: Saccharomyces cerevisiae
Length: 239 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CPD1.

Description E-value Query
Range
Subject
Range
CPD1_YEAST - 2',3'-cyclic-nucleotide 3'-phosphodiesterase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c...
CPD1 - Cyclic nucleotide phosphodiesterase, hydrolyzes ADP-ribose 1'', 2''-cyclic phosphate to ADP-ribose 1...
0.0 [1..239] [1..239]

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Predicted Domain #1
Region A:
Residues: [1-239]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIALWYCPP QGSVAYETLQ MLIFSFQTLF PDSPVFEPHV TVTSHLVCNS KDDVNKILTS  60
   61 CVAAIQSIRS HQTAKKGRKG QVSHAVAAPL VSFNGCSVGK QYFKKIVLEC NKNKILYGVA 120
  121 QVMREMYVEI DPETRSSRAA TWVHEEFHPH VSLLYSDIHP VSQASLRVVQ QRIEDALDVQ 180
  181 LVPREKRKGS GNADGSNEVQ MRWDFDVSSS LSWNIPGTFK VVNCVGPVQE WEVLGRVDV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted functions:

Term Confidence Notes
cyclic-nucleotide phosphodiesterase activity 0.943836585803615 bayes_pls_golite062009
catalytic activity 0.853948963582441 bayes_pls_golite062009
binding 0.765852801454389 bayes_pls_golite062009
phosphoric diester hydrolase activity 0.72614328951284 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle