YRC Public Data Repository - Protein Structure Prediction

Protein:	BNS1
Organism:	Saccharomyces cerevisiae
Length:	137 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BNS1.

Description	E-value	Query Range	Subject Range
ITN1_MOUSE, ITSN... - Intersectin-1 OS=Mus musculus GN=Itsn1 PE=1 SV=1, (Q9Z0R4) Intersectin 1 (EH and SH3 domains protein...	167.0	[0..7]	[135..573]
gi\|109479040 - gi\|109479040\|ref\|XP_001067202.1\| PREDICTED: similar to SH3 domain protein 1B isoform 2 [Rattus norve...	157.0	[0..6]	[137..586]
gi\|114576426 - gi\|114576426\|ref\|XP_001144557.1\| PREDICTED: intersectin 2 isoform 1 [Pan troglodytes]	156.0	[0..7]	[132..587]
gi\|22325381 - gi\|22325381\|ref\|NP_062541.2\| intersectin 2 isoform 3 [Homo sapiens]	156.0	[0..7]	[132..586]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYGGSASQD IVTKLIRKIQ NTSVSCTRRD ENLDSFNQHL KMSLKVAHNT KTFAKHCLHR  60
   61 QVFKNTYRKR KAVEDQRKNL NTQLRQKFAS PSDNLLSPCS RKLNDHKSKL FSAKSQPKTL 120
  121 EFVRGKQNIP RKPNVDI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits