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View Structure Prediction Details

Protein: BNS1
Organism: Saccharomyces cerevisiae
Length: 137 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BNS1.

Description E-value Query
Range
Subject
Range
ITN1_MOUSE, ITSN... - Intersectin-1 OS=Mus musculus GN=Itsn1 PE=1 SV=1, (Q9Z0R4) Intersectin 1 (EH and SH3 domains protein...
167.0 [0..7] [135..573]
gi|109479040 - gi|109479040|ref|XP_001067202.1| PREDICTED: similar to SH3 domain protein 1B isoform 2 [Rattus norve...
157.0 [0..6] [137..586]
gi|114576426 - gi|114576426|ref|XP_001144557.1| PREDICTED: intersectin 2 isoform 1 [Pan troglodytes]
156.0 [0..7] [132..587]
gi|22325381 - gi|22325381|ref|NP_062541.2| intersectin 2 isoform 3 [Homo sapiens]
156.0 [0..7] [132..586]

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Predicted Domain #1
Region A:
Residues: [1-137]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYGGSASQD IVTKLIRKIQ NTSVSCTRRD ENLDSFNQHL KMSLKVAHNT KTFAKHCLHR  60
   61 QVFKNTYRKR KAVEDQRKNL NTQLRQKFAS PSDNLLSPCS RKLNDHKSKL FSAKSQPKTL 120
  121 EFVRGKQNIP RKPNVDI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.403 a.1.1 Globin-like
View Download 0.354 a.29.13 Description not found.
View Download 0.270 a.79.1 Antitermination factor NusB
View Download 0.252 a.1.1 Globin-like
View Download 0.252 a.1.1 Globin-like
View Download 0.246 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.234 a.24.17 Group V grass pollen allergen
View Download 0.226 d.112.1 Phoshotransferase/anion transport protein


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle