YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: HIP1
Organism: Saccharomyces cerevisiae
Length: 603 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HIP1.

Description E-value Query
Range
Subject
Range
HIP1 - High-affinity histidine permease, also involved in the transport of manganese ions
HIP1_YEAST - Histidine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HIP1 PE=1 SV=2
0.0 [1..603] [1..603]
gi|447739 - gi|447739|prf||1915304A nylB upstream ORF
0.0 [7..602] [4..608]
gi|15054460 - gi|15054460|dbj|BAB62308.1| branched-chain amino acid permease [Saccharomyces pastorianus]
gi|15054462 - gi|15054462|dbj|BAB62309.1| branched-chain amino acid permease [Saccharomyces bayanus]
0.0 [5..603] [2..609]
gi|68470470, gi|... - gi|68470731|ref|XP_720611.1| N-acetylglucosamine-inducible general amino acid permease [Candida albi...
gi|18568390 - gi|18568390|gb|AAL76065.1| Gap1 protein [Candida albicans]
gi|238882678 - gi|238882678|gb|EEQ46316.1| general amino-acid permease GAP1 [Candida albicans WO-1]
0.0 [25..603] [3..582]

Back

Predicted Domain #1
Region A:
Residues: [1-74]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRNPLKKEY WADVVDGFKP ATSPAFENEK ESTTFVTELT SKTDSAFPLS SKDSPGINQT  60
   61 TNDITSSDRF RRNE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [75-603]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTEQEDINNT NLSKDLSVRH LLTLAVGGAI GTGLYVNTGA ALSTGGPASL VIDWVIISTC  60
   61 LFTVINSLGE LSAAFPVVGG FNVYSMRFIE PSFAFAVNLN YLAQWLVLLP LELVAASITI 120
  121 KYWNDKINSD AWVAIFYATI ALANMLDVKS FGETEFVLSM IKILSIIGFT ILGIVLSCGG 180
  181 GPHGGYIGGK YWHDPGAFVG HSSGTQFKGL CSVFVTAAFS YSGIEMTAVS AAESKNPRET 240
  241 IPKAAKRTFW LITASYVTIL TLIGCLVPSN DPRLLNGSSS VDAASSPLVI AIENGGIKGL 300
  301 PSLMNAIILI AVVSVANSAV YACSRCMVAM AHIGNLPKFL NRVDKRGRPM NAILLTLFFG 360
  361 LLSFVAASDK QAEVFTWLSA LSGLSTIFCW MAINLSHIRF RQAMKVQERS LDELPFISQT 420
  421 GVKGSWYGFI VLFLVLIASF WTSLFPLGGS GASAESFFEG YLSFPILIVC YVGHKLYTRN 480
  481 WTLMVKLEDM DLDTGRKQVD LTLRREEMRI ERETLAKRSF VTRFLHFWC

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 200.853872
Match: PF00324
Description: Amino acid permease

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle