YRC Public Data Repository - Protein Structure Prediction

Protein:	TIM13
Organism:	Saccharomyces cerevisiae
Length:	105 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIM13.

Description	E-value	Query Range	Subject Range
gi\|190406804 - gi\|190406804\|gb\|EDV10071.1\| mitochondrial import inner membrane translocase subunit TIM13 [Saccharom... TIM13 - Mitochondrial intermembrane space protein, forms a complex with Tim8p that delivers a subset of hydr... TIM13_YEAST - Mitochondrial import inner membrane translocase subunit TIM13 OS=Saccharomyces cerevisiae (strain AT... gi\|151943459 - gi\|151943459\|gb\|EDN61770.1\| translocase of the inner membrane [Saccharomyces cerevisiae YJM789]	1.0E-31	[1..105]	[1..105]
tim13 - TIM22 inner membrane protein import complex subunit Tim13 TIM13_SCHPO - Mitochondrial import inner membrane translocase subunit tim13 OS=Schizosaccharomyces pombe (strain 9...	7.0E-22	[1..102]	[1..93]
TIM9_MESCR - Mitochondrial import inner membrane translocase subunit Tim9 OS=Mesembryanthemum crystallinum GN=TIM...	4.0E-19	[17..99]	[2..89]
TIM9_ORYSA, IM09... - (Q9XGX7) Mitochondrial import inner membrane translocase subunit Tim9, (Q9XGX7) Mitochondrial import...	2.0E-18	[17..98]	[2..88]
TIM8B_MOUSE - Mitochondrial import inner membrane translocase subunit Tim8 B OS=Mus musculus GN=Timm8b PE=1 SV=1 TIM8B_RAT - Mitochondrial import inner membrane translocase subunit Tim8 B OS=Rattus norvegicus GN=Timm8b PE=3 S...	7.0E-18	[22..99]	[1..81]
gi\|5107178, gi\|7... - gi\|74096149\|ref\|NP_001027735.1\| small zinc finger-like protein [Ciona intestinalis], gi\|5107178\|gb\|A...	1.0E-17	[29..105]	[1..83]
gi\|114640332 - gi\|114640332\|ref\|XP_001146364.1\| PREDICTED: translocase of inner mitochondrial membrane 8 homolog B ... TIMM8B - translocase of inner mitochondrial membrane 8 homolog B (yeast) ENSCJAT00000021390 - null	2.0E-17	[22..99]	[1..81]
TIM9_ARATH - Mitochondrial import inner membrane translocase subunit TIM9 OS=Arabidopsis thaliana GN=TIM9 PE=1 SV...	1.0E-16	[17..99]	[2..89]
TIM8_NEUCR - Mitochondrial import inner membrane translocase subunit tim8 OS=Neurospora crassa (strain ATCC 24698... TIM8_NEUCR, IM08... - Mitochondrial import inner membrane translocase subunit tim-8 OS=Neurospora crassa GN=tim-8 PE=1 SV=...	4.0E-16	[23..101]	[9..92]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLSSIFGGG APSQQKEAAT TAKTTPNPIA KELKNQIAQE LAVANATELV NKISENCFEK  60
   61 CLTSPYATRN DACIDQCLAK YMRSWNVISK AYISRIQNAS ASGEI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.387216
Match:	PF02953
Description:	Tim10/DDP family zinc finger

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
protein transporter activity	3.96569591038426	bayes_pls_golite062009
transporter activity	3.42555440535265	bayes_pls_golite062009
protein transmembrane transporter activity	3.05578860381335	bayes_pls_golite062009
P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.52072322460318	bayes_pls_golite062009
macromolecule transmembrane transporter activity	2.52072322460318	bayes_pls_golite062009
substrate-specific transporter activity	2.26454691978513	bayes_pls_golite062009
transmembrane transporter activity	2.01475009173074	bayes_pls_golite062009
binding	1.95236231715199	bayes_pls_golite062009
protein binding	1.54231655177329	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.5410808613005	bayes_pls_golite062009
unfolded protein binding	0.0997632819038001	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: