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View Structure Prediction Details

Protein: MEP1
Organism: Saccharomyces cerevisiae
Length: 492 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MEP1.

Description E-value Query
Range
Subject
Range
gi|207345095 - gi|207345095|gb|EDZ72028.1| YGR121Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|151943400 - gi|151943400|gb|EDN61711.1| ammonium transporter [Saccharomyces cerevisiae YJM789]
MEP1 - Ammonium permease; belongs to a ubiquitous family of cytoplasmic membrane proteins that transport on...
gi|190406862 - gi|190406862|gb|EDV10129.1| ammonia permease [Saccharomyces cerevisiae RM11-1a]
MEP1_YEAST - Ammonium transporter MEP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MEP1 PE=1 SV=1
0.0 [1..492] [1..492]
gi|67900952, gi|... - gi|67900952|ref|XP_680732.1| hypothetical protein AN7463.2 [Aspergillus nidulans FGSC A4], ref|XP_41...
gi|18693013 - gi|18693013|gb|AAL73117.1| ammonium transporter MEAA [Emericella nidulans]
0.0 [13..482] [45..511]
gi|17221150 - gi|17221150|gb|AAL11032.1| high affinity ammonium transporter [Tuber borchii]
0.0 [13..462] [33..480]
gi|15808693 - gi|15808693|gb|AAL08424.1|AF187870_1 probable ammonium transporter MEP1 [Ustilago maydis]
0.0 [5..483] [33..516]
amt2 - ammonium transporter Amt2
AMT2_SCHPO - Ammonium transporter 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=amt2 PE=3 SV=1
0.0 [13..458] [41..491]
gi|5230672 - gi|5230672|gb|AAD40955.1|AF159568_1 ammonium transporter MEPa [Microbotryum violaceum]
0.0 [2..434] [5..444]
gi|85104138 - gi|85104138|ref|XP_961677.1| ammonium transporter MEP2 [Neurospora crassa OR74A]
gi|32412156, gi|... - gi|32412156|ref|XP_326558.1| hypothetical protein [Neurospora crassa], gi|28923225|gb|EAA32441.1| am...
0.0 [2..433] [16..456]

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Predicted Domain #1
Region A:
Residues: [1-492]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESRTTGPLT TETYDGPTVA FMILGAALVF FMVPGLGFLY SGLARRKSAL ALIWVVLMAT  60
   61 LVGILQWYFW GYSLAFSKSA PNNKFIGNLD SFGFRNVYGK KFDEDAYPEL AYATFQMMFS 120
  121 CVNLSIIAGA TAERGRLLPH MVFLFILATI GYCPVTYWIW SPGGWAYQWG VLDWAGGGNI 180
  181 EILSAVSGFV YSWFLGKRNE KLLINFRPHN VSLVTLGTSI LWFGWLLFNS ASSLSPNLRS 240
  241 VYAFMNTCLS AITGGMTWCL LDYRSEKKWS TVGLCSGIIS GLVAATPSSG CITLYGSLIQ 300
  301 GIVAGVVCNF ATKLKYYAKV DDAMDILAEH GVAGVIGLIF NALFGADWVI GMDGTTEHEG 360
  361 GWVTHNYKQM YKQIAYIAAS IGYTAAVTAI ICFVLGYIPG MRLRISEEAE EAGMDEDQIG 420
  421 EFAYDYVEVR RDYYLWGVDE DSQRSDVNHR VNNAHLAAER SSSGTNSSSD GNGEMIQSEK 480
  481 ILPIHQEDPA NR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 191.366532
Match: PF00909
Description: Ammonium Transporter Family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term Confidence Notes
ammonium transmembrane transporter activity 10.0624820335928 bayes_pls_golite062009
organic cation transmembrane transporter activity 9.07420898067257 bayes_pls_golite062009
cation transmembrane transporter activity 7.57181833547312 bayes_pls_golite062009
ion transmembrane transporter activity 7.46308808953548 bayes_pls_golite062009
methylammonium transmembrane transporter activity 7.38326654060024 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 7.08971867997216 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 7.03159982829686 bayes_pls_golite062009
transporter activity 5.3870893301235 bayes_pls_golite062009
transmembrane transporter activity 5.3046132351753 bayes_pls_golite062009
substrate-specific transporter activity 5.16067985999244 bayes_pls_golite062009
high affinity secondary active ammonium transmembrane transporter activity 3.56825523857899 bayes_pls_golite062009
amine transmembrane transporter activity 2.81164277777293 bayes_pls_golite062009
active transmembrane transporter activity 1.08017669832334 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle