YRC Public Data Repository - Protein Structure Prediction

Protein:	MUP1
Organism:	Saccharomyces cerevisiae
Length:	574 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MUP1.

Description	E-value	Query Range	Subject Range
LAT2_RAT - Large neutral amino acids transporter small subunit 2 OS=Rattus norvegicus GN=Slc7a8 PE=1 SV=1	0.0	[15..571]	[1..532]
LAT2_RABIT - Large neutral amino acids transporter small subunit 2 OS=Oryctolagus cuniculus GN=SLC7A8 PE=1 SV=1	0.0	[15..571]	[1..532]
LAT2_MOUSE - Large neutral amino acids transporter small subunit 2 OS=Mus musculus GN=Slc7a8 PE=1 SV=1	0.0	[15..571]	[1..530]
GNP1_YEAST - High-affinity glutamine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GNP1 PE... GNP1 - High-affinity glutamine permease, also transports Leu, Ser, Thr, Cys, Met and Asn; expression is ful...	3.0E-93	[5..549]	[78..647]
gi\|68470470, gi\|... - gi\|68470731\|ref\|XP_720611.1\| N-acetylglucosamine-inducible general amino acid permease [Candida albi... gi\|18568390 - gi\|18568390\|gb\|AAL76065.1\| Gap1 protein [Candida albicans] gi\|238882678 - gi\|238882678\|gb\|EEQ46316.1\| general amino-acid permease GAP1 [Candida albicans WO-1]	2.0E-91	[10..527]	[17..546]
YI26_SCHPO - Uncharacterized amino-acid permease P7G5.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G... SPAP7G5.06 - amino acid permease, unknown 4	2.0E-89	[25..548]	[38..570]
gi\|1778491 - gi\|1778491\|gb\|AAB40774.1\| phenylalanine-specific permease [Escherichia coli]	2.0E-86	[27..498]	[5..464]

Back

Predicted Domain #1

Region A:
Residues: [1-52]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEGRTFLSQ LNVFNKENYQ FSSSTTKKEV SNSTVDADNG ASDFEAGQQF AT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [53-574]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELDQGEKQLG ILSCIGLICN RMLGTGVFAV SSTIYTLCGS VGLALIMWAV GAIIAISGLY  60
   61 VYMEFGTAIP KNGGEKNYLE AIFRKPKFFI TCMYAAYIFF LGWAAGNSIN TAIMFLTAAD 120
  121 TEVTKWNQRG IGVAVVFFAF LINSLNVKIG LYLQNILGIF KIGIVLFISI TGWVALGGGL 180
  181 KDGYQSHNFR NAFEGTETAT AYGIVNALYS VIWSFVGYSN VNYALGEVKN PVRTLKIAGP 240
  241 TSMVFLAIIY IFVNIAYFAV VPKDKLISSK LILAADFFDI VFGGQAKRAA AALVGLSALG 300
  301 NVLSVIFSQG RIIQQLGREG VLPFSNFFAS SKPFNSPMVG LFQHFIVCTV TILAPPPGDA 360
  361 YLLVQNLISY PMNIINFAIS AGLLWIYWQR RQGKIEWNPP IKAGVFVTGF FTLSNLYLII 420
  421 APYVPPSNGE SVYSSMPYWI HCVIAWGIFF FGGVYYVVWA QLLPRWGHYK LVSKDVLGED 480
  481 GFWRVKIAKV YDDTIGDVDT QEDGVIETNI IEHYKSEQEK SL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.886057
Match:	PF00324
Description:	Amino acid permease

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits