YRC Public Data Repository - Protein Structure Prediction

Protein:	ERV1
Organism:	Saccharomyces cerevisiae
Length:	189 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERV1.

Description	E-value	Query Range	Subject Range
GFER - growth factor, augmenter of liver regeneration	229.0	[0..8]	[189..57]
gi\|109127227 - gi\|109127227\|ref\|XP_001082639.1\| PREDICTED: similar to erv1-like growth factor isoform 2 [Macaca mul...	221.0	[0..8]	[189..57]
gi\|73959530 - gi\|73959530\|ref\|XP_537010.2\| PREDICTED: similar to erv1-like growth factor [Canis familiaris]	215.0	[0..12]	[189..166]
ALR_MOUSE - FAD-linked sulfhydryl oxidase ALR OS=Mus musculus GN=Gfer PE=1 SV=2	212.0	[0..28]	[189..62]
erv1 - sulfhydryl oxidase ERV1_SCHPO - Mitochondrial FAD-linked sulfhydryl oxidase erv1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	208.0	[0..21]	[182..14]
gi\|49525710 - gi\|49525710\|emb\|CAG59329.1\| unnamed protein product [Candida glabrata] gi\|50287947, gi\|... - gi\|50287947\|ref\|XP_446402.1\| unnamed protein product [Candida glabrata], gi\|49525710\|emb\|CAG59329.1\|...	206.0	[0..12]	[189..3]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAIDKMTDN PPQEGLSGRK IIYDEDGKPC RSCNTLLDFQ YVTGKISNGL KNLSSNGKLA  60
   61 GTGALTGEAS EL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [73-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGSRTYRKV DPPDVEQLGR SSWTLLHSVA ASYPAQPTDQ QKGEMKQFLN IFSHIYPCNW  60
   61 CAKDFEKYIR ENAPQVESRE ELGRWMCEAH NKVNKKLRKP KFDCNFWEKR WKDGWDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.39794
Match:	1oqcA
Description:	Augmenter of liver regeneration
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits