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View Structure Prediction Details

Protein: YGR027W-A
Organism: Saccharomyces cerevisiae
Length: 440 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGR027W-A.

Description E-value Query
Range
Subject
Range
YNL054W-B - TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are req...
YN12B_YEAST - Transposon Ty1-NL2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T...
564.0 [0..1] [435..1]

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Predicted Domain #1
Region A:
Residues: [1-122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSQHS HISHGSACAS VTSKEVHTNQ DPLDVSASKT EECEKASTKA NSQQTTTPAS  60
   61 SAVPENPHHA SPQTAQSHSP QNGPYPQQCM MTQNQANPSG WSFYGHPSMI PYTPYQMSPM 120
  121 YF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 67.318759
Match: PF01021.9
Description: No description for PF01021.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [123-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPGPQSQFPQ YPSSVGTPLS TPSPESGNTF TDSSSADSDM TSTKKYVRPP PMLTSPNDFP  60
   61 NWVKTYIKFL QNSNLGGIIP TVNGKPVRQI TDDELTFLYN TFQIFAPSQF LPTWVKDILS 120
  121 VDYTDIMKIL SKSIEKMQSD TQEANDIVTL ANLQYNGS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [281-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPADAFETKV TNIIDRLNNN GIHINNKVAC QLIMRGLSGE YKFLRYTRHR HLNMTVAELF  60
   61 LDIHAIYEEQ QGSRNSKPNY RRNLSDEKND SRSYTNTTKP KVIARNPQKT NNSKSKTARA 120
  121 HNVSTSNNSP STDNDSISKS TTEPIQLNNK HDLHLRPGTY 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle