| Protein: | MSB2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1306 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSB2.
| Description | E-value | Query Range |
Subject Range |
|
|
419.0 | [0..1] | [1195..1157] |
|
|
410.0 | [0..13] | [1190..418] |
|
|
310.0 | [0..2] | [1197..1317] |
|
Region A: Residues: [1-81] |
1 11 21 31 41 51
| | | | | |
1 MQFPFACLLS TLVISGSLAR ASPFDFIFGN GTQQAQSQSE SQGQVSFTNE ASQDSSTTSL 60
61 VTAYSQGVHS HQSATIVSAT I
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [82-326] |
1 11 21 31 41 51
| | | | | |
1 SSLPSTWYDA SSTSQTSVSY ASQESDYAVN QNSWSASTNQ LPSTSTTSYY APTFSTSADF 60
61 AASSVNAASD VSTASVPIDT SANSIPFTTT SNIETTTSAP LTSDTPLIST STMSAADNVF 120
121 SSANPISASL TTTDSSESFD QTSTAGAIPV QSSADFSSSS EILVQSSADF SSPSSPTTTD 180
181 ISLSAAPLQT SESSSFTTAS AALPVSSTDV DGSSASPVVS MSAAGQIASS SSTDNPTMSE 240
241 TFSLT
|
| Detection Method: | |
| Confidence: | 8.0 |
| Match: | 2h6oA |
| Description: | No description for 2h6oA was found. |
|
Region A: Residues: [327-454] |
1 11 21 31 41 51
| | | | | |
1 STEVDGSDVS STVSALLSAP FLQTSTSNSF SIVSPSVSFV PSQSSSDVAS SSTANVVSSS 60
61 FSDIPPQTST SGSVVSVAQS ASALAFQSST EVYGASASST MSSLLSTTSL QSTTLDSSSL 120
121 ASSSASSS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [455-645] |
1 11 21 31 41 51
| | | | | |
1 DLTDYGVSST ASIPLLSASE QASTSSSFSV VSPSVSFVPS QSSSDVASTS APSVVSSSFS 60
61 YTSLQAGGSS MTNPSSSTIV YSSSTGSSEE SAASTASATL SGSSSTYMAG NLQSQPPSTS 120
121 SLLSESQATS TSAVLASSSV STTSPYTTAG GASTEASSLI SSTSAETSQV SYSQSTTALQ 180
181 TSSFASSSTT E
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [646-873] |
1 11 21 31 41 51
| | | | | |
1 GSETSSQGFS TSSVLVQMPS SISSEFSPSQ TTTQMNSASS SSQYTISSTG ILSQVSDTSV 60
61 SYTTSSSSVS QVSDTPVSYT TSSSSVSQVS DTPVSYTTSS SSVSQVSDTP VSYTTSSSSV 120
121 SQVSDTPVSY TTSSSSVSQV SDTSVPSTSS RSSVSQVSDT PVPSTSSRSS VSQTSSSLQP 180
181 TTTSSQRFTI STHGALSESS SVSQQASEIT SSINATASEY HSIQTTAA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [874-1070] |
1 11 21 31 41 51
| | | | | |
1 TQSTTLSFTD ANSSSASAPL EVATSTPTPS SKASSLLLTP STSSLSQVAT NTNVQTSLTT 60
61 ESTTVLEPST TNSSSTFSLV TSSDNNWWIP TELITQAPEA ASTASSTVGG TQTMTLPHAI 120
121 AAATQVPEPE GYTLITIGFK KALNYEFVVS EPKSSAQIFG YLPEALNTPF KNVFTNITVL 180
181 QIVPLQDDSL NYLVSVA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1071-1223] |
1 11 21 31 41 51
| | | | | |
1 EVYFPTAEIE ELSNLITNSS SAFYTDGMGT AKSMAAMVDS SIPLTGLLHD SNSNSGGSSD 60
61 GSSSSNSNSG SSGSGSNSNS GVSSSSGNSY QDAGTLEYSS KSNSNVSTSS KSKKKIIGLV 120
121 IGVVVGGCLY ILFMIFAFKY IIRRRIQSQE IIK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1224-1306] |
1 11 21 31 41 51
| | | | | |
1 NPEISSISSS EFGGEKNYNN EKRMSVQESI TQSMRIQNWM DDSYYGHGLT NNDSTPTRHN 60
61 TSSSIPKISR PIASQNSLGW NEV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.578 | d.317.1 | Description not found. |
| View | Download | 0.554 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.502 | d.58.36 | Sulfite reductase, domains 1 and 3 |
| View | Download | 0.488 | d.9.2 | Description not found. |
| View | Download | 0.488 | b.34.13 | Chromo domain-like |
| View | Download | 0.431 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.394 | c.47.1 | Thioredoxin-like |
