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View Structure Prediction Details

Protein: YGL242C
Organism: Saccharomyces cerevisiae
Length: 181 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGL242C.

Description E-value Query
Range
Subject
Range
ANK2 - ankyrin 2, neuronal
5.0E-46 [1..173] [292..446]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
9.0E-44 [1..173] [294..448]
gi|3885972 - gi|3885972|gb|AAC78143.1| 270 kDa ankyrin G isoform [Rattus norvegicus]
3.0E-43 [1..173] [302..456]
gi|17887457 - gi|17887457|gb|AAL40894.1| AKT1-like potassium channel [Oryza sativa]
8.0E-42 [2..173] [518..669]
gi|447739 - gi|447739|prf||1915304A nylB upstream ORF
1.0E-41 [2..172] [365..517]

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Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTEGASLSE QLLDAARRNN LDLLETVFDS LDNDPEKIAK LINESKEPLG NTALHLCCKY  60
   61 GSWEVLDKIL DQDGEIEIDP QNDVDGDT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.154902
Match: 1awcB_
Description: GA bindinig protein (GABP) beta 1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [89-181]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLHVTVRYSQ EEPEHGTFIA RNLIEVGADP RVRNYNNQKP VDLVHGDELD ELIDLLQGAE  60
   61 LAIDSTNGSG DNNEDGEMID DGPSDDDEED DKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.154902
Match: 1awcB_
Description: GA bindinig protein (GABP) beta 1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle