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View Structure Prediction Details

Protein: VRG4
Organism: Saccharomyces cerevisiae
Length: 337 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VRG4.

Description E-value Query
Range
Subject
Range
WTR13_ARATH - WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1
1.0E-42 [1..331] [1..333]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
2.0E-39 [3..335] [90..410]
gi|2598575 - gi|2598575|emb|CAA75575.1| MtN21 [Medicago truncatula]
5.0E-39 [20..329] [17..337]
gi|14090211, gi|... - gi|34895316|ref|NP_909001.1| putative nodulin-like protein 5NG4 [Oryza sativa (japonica cultivar-gro...
2.0E-38 [5..333] [3..334]
gi|9295273 - gi|9295273|gb|AAF86906.1|AF223358_1 triose phosphate/phosphate translocator precursor [Mesembryanthe...
6.0E-38 [7..337] [78..402]
CPT1_BRAOL - (P52177) Triose phosphate/phosphate translocator, chloroplast precursor (CTPT)
TPT1_BRAOB - Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=...
1.0E-37 [3..337] [77..405]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELKTGHAG HNPWASVANS GPISILSYCG SSILMTVTNK FVVNLKDFNM NFVMLFVQSL  60
   61 VCTITLIILR ILGYAKFRSL 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [81-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKTDAKNWFP ISFLLVLMIY TSSKALQYLA VPIYTIFKNL TIILIAYGEV LFFGGSVTSM  60
   61 ELSSFLLMVL SSVVATWGDQ QAVAAKAASL AEGAAGAVAS FNPGYFWMFT NCITSALFVL 120
  121 IMRKRIKLTN FKDFDTMFYN NVLALPILLL FSFCVEDWSS VNLTNNFSND SLTAMIISGV 180
  181 ASVGISYCSG WCVRVTSSTT YSMVGALNKL PIALSGLIFF DAPRNFLSIL SIFIGFLSGI 240
  241 IYAVAKQKKQ QAQPLRK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle