| Protein: | VRG4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 337 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VRG4.
| Description | E-value | Query Range |
Subject Range |
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1.0E-42 | [1..331] | [1..333] |
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2.0E-39 | [3..335] | [90..410] |
|
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5.0E-39 | [20..329] | [17..337] |
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2.0E-38 | [5..333] | [3..334] |
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6.0E-38 | [7..337] | [78..402] |
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1.0E-37 | [3..337] | [77..405] |
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Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MSELKTGHAG HNPWASVANS GPISILSYCG SSILMTVTNK FVVNLKDFNM NFVMLFVQSL 60
61 VCTITLIILR ILGYAKFRSL
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| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.522 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.556 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.487 | a.130.1 | Chorismate mutase II |
| View | Download | 0.670 | a.54.1 | Domain of early E2A DNA-binding protein, ADDBP |
| View | Download | 0.512 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.480 | a.64.1 | Saposin |
| View | Download | 0.446 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.445 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.441 | a.24.3 | Cytochromes |
| View | Download | 0.438 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.389 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.388 | a.112.1 | Description not found. |
| View | Download | 0.369 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.344 | a.105.1 | FIS-like |
| View | Download | 0.325 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.310 | a.46.1 | Methionine synthase domain |
| View | Download | 0.309 | a.74.1 | Cyclin-like |
| View | Download | 0.309 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.300 | a.151.1 | Glutamyl tRNA-reductase dimerization domain |
| View | Download | 0.300 | d.58.49 | YajQ-like |
| View | Download | 0.298 | a.2.3 | Chaperone J-domain |
| View | Download | 0.295 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.292 | a.2.7 | tRNA-binding arm |
| View | Download | 0.288 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.286 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.271 | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.270 | a.47.2 | t-snare proteins |
| View | Download | 0.268 | d.101.1 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
| View | Download | 0.268 | d.58.16 | Poly(A) polymerase, C-terminal domain |
| View | Download | 0.264 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.263 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.253 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.245 | d.201.1 | SRP19 |
| View | Download | 0.240 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.236 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.235 | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.234 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.229 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.228 | a.77.1 | DEATH domain |
| View | Download | 0.226 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.224 | a.7.7 | BAG domain |
| View | Download | 0.221 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.213 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.212 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.212 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.212 | a.11.1 | Acyl-CoA binding protein |
| View | Download | 0.211 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.207 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.207 | a.77.1 | DEATH domain |
| View | Download | 0.205 | d.58.25 | Killer toxin KP6 alpha-subunit |
| View | Download | 0.201 | a.74.1 | Cyclin-like |
|
Region A: Residues: [81-337] |
1 11 21 31 41 51
| | | | | |
1 NKTDAKNWFP ISFLLVLMIY TSSKALQYLA VPIYTIFKNL TIILIAYGEV LFFGGSVTSM 60
61 ELSSFLLMVL SSVVATWGDQ QAVAAKAASL AEGAAGAVAS FNPGYFWMFT NCITSALFVL 120
121 IMRKRIKLTN FKDFDTMFYN NVLALPILLL FSFCVEDWSS VNLTNNFSND SLTAMIISGV 180
181 ASVGISYCSG WCVRVTSSTT YSMVGALNKL PIALSGLIFF DAPRNFLSIL SIFIGFLSGI 240
241 IYAVAKQKKQ QAQPLRK
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
