Protein: | MDS3 |
Organism: | Saccharomyces cerevisiae |
Length: | 1487 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MDS3.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..1479] | [1..1594] |
|
7.0E-67 | [576..793] | [62..257] |
|
8.0E-60 | [107..462] | [29..413] |
|
7.0E-52 | [45..331] | [141..407] |
Region A: Residues: [1-88] |
1 11 21 31 41 51 | | | | | | 1 MPLLQPSTCF CYPLKLPPLP LTSDSNEFDE CARKRLTLDY RTGSAVTLTR SNIFVHGGLT 60 61 IPLNLPVVNS MQLQKELILF FAKEKNNG |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [89-334] |
1 11 21 31 41 51 | | | | | | 1 SSFRNLNEWI SKETFFLDLM SRTWYRVKTS FDQRTEELLK AESSSAKADN DTNEIRTDIK 60 61 KGKSLESPLK ERLFHSLCYL DGCLYIFGGL TVSPQSGYEL IATNELWKLD LNTKKWSLLS 120 121 DDPQIARRFN HTMHVKNENN DNRDTKLIIV GGLNNMDQPV KKIDIYNISQ NCWHPKTIPK 180 181 QPMEITTNVN GIPLALSKDQ NFSILVENNE ANVPALAFYM RSDQIDEYLG KDSSKIKENS 240 241 PIVALP |
Detection Method: | ![]() |
Confidence: | 4.522879 |
Match: | 1gof__ |
Description: | Galactose oxidase, C-terminal domain; Galactose oxidase, N-terminal domain; Galactose oxidase, central domain |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [335-553] |
1 11 21 31 41 51 | | | | | | 1 LLSESQGIRM PSNPALPKKL LNVPYELLAP TGDYFGFNII IGGFHPNYQS SNFHCFIYDI 60 61 NSGKWSRVRT ACPDCDINKH RFWRVFVWKS HHQTILLGTK TDDYYSPSVQ RFDHLSTFGL 120 121 PLVNIFNKTI QLPHHKISAS SLPIPIENFA KHKDTPLKKV SFTSSATSQF ENYIRYIAPP 180 181 LEMSSIQSVF PPYAMVLGKD ALEIYGKPLS DFEFITSEG |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [554-793] |
1 11 21 31 41 51 | | | | | | 1 DSIGIPCYLL RKRWGRYFDM LLSQSYTKVC ADYETTDTQS TLIKFSPHSS RNSSKAVRQE 60 61 GRLSSSGSLD NYFEKNFPIF ARTSVSEAQN TQPQVANADA KAPNTPSTSD EPSSSSSSDL 120 121 YSTPHYQRNN DEEDDEDPVS PKPVSKSNSI YRPIRKTESS STTSSSNGMI FRVPFKEKAA 180 181 VTSNTEALLE SNLSLQELSR RRSSLMSIPS GELLRSSISE AEHQRRASHP LTSSPLFEDS 240 241 |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [794-1487] |
1 11 21 31 41 51 | | | | | | 1 GTPCGKQLQQ LQQHTIQNPH NHLSPRRFSR SARSSISYVS SSSDRRGNSI SSRSTSDSFG 60 61 TPPVLGVLNV PLPPQTREPN EPPPPCPAMS TGSNTRRSNT LTDYMHSNKA SPFSSRRSSH 120 121 IGRRSSTPET ENAFSATPRA SLDGQMLGKS LKEGSTSQYT QPRMNSFPKA NETIQTPTSS 180 181 NNEWSRQSVT SNTDSFDSLQ SNFALELEPL LTPRSLYMPW PTSTVRAFAE FFYTGQVNSK 240 241 WLLAPVALDL LVMAKIYEIP LLYKLILEVL YSILAKKEES LSLICTSLME TFRTKTLNSY 300 301 KGDEEKTNTY LTSNDNYQEL LKLKVSLENI DNGYYDPDLL RKQSRAQSSS TQESSGSANG 360 361 EKTATGAGSL ETSSTNVPTV FAGGPRDSHN SVGSIGFPNS MNIQGSRRST SGFSPRVKMK 420 421 SSLSKEIDPK TFYEEYEPKE GKSFDDNDDQ QTNIGSFNLH LFDMNYGSIS SSSTNSISSS 480 481 DLEEKEEQEQ LQDLLEIERE DSAEILDARF RNKEDDKVTK DISNDKKRNY LPHEKNNLKA 540 541 KEGKETRDVR EEEEEFDFGL GMLSLNKIKR EAKHVDKVDD SVDPLFKSSA FPQSPIRAYG 600 601 STTRTSSASG KPFRDNRSFN AFSVLTLENM ASANALPPVD YVIKSIYRTT VLVNDIRLMV 660 661 RCMDCIELSK NLRALKKKTM EDISKLKGIS KPSP |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [794-884] |
1 11 21 31 41 51 | | | | | | 1 GTPCGKQLQQ LQQHTIQNPH NHLSPRRFSR SARSSISYVS SSSDRRGNSI SSRSTSDSFG 60 61 TPPVLGVLNV PLPPQTREPN EPPPPCPAMS T |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [885-959] |
1 11 21 31 41 51 | | | | | | 1 GSNTRRSNTL TDYMHSNKAS PFSSRRSSHI GRRSSTPETE NAFSATPRAS LDGQMLGKSL 60 61 KEGSTSQYTQ PRMNS |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [960-1194] |
1 11 21 31 41 51 | | | | | | 1 FPKANETIQT PTSSNNEWSR QSVTSNTDSF DSLQSNFALE LEPLLTPRSL YMPWPTSTVR 60 61 AFAEFFYTGQ VNSKWLLAPV ALDLLVMAKI YEIPLLYKLI LEVLYSILAK KEESLSLICT 120 121 SLMETFRTKT LNSYKGDEEK TNTYLTSNDN YQELLKLKVS LENIDNGYYD PDLLRKQSRA 180 181 QSSSTQESSG SANGEKTATG AGSLETSSTN VPTVFAGGPR DSHNSVGSIG FPNSM |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [1195-1326] |
1 11 21 31 41 51 | | | | | | 1 NIQGSRRSTS GFSPRVKMKS SLSKEIDPKT FYEEYEPKEG KSFDDNDDQQ TNIGSFNLHL 60 61 FDMNYGSISS SSTNSISSSD LEEKEEQEQL QDLLEIERED SAEILDARFR NKEDDKVTKD 120 121 ISNDKKRNYL PH |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [1327-1487] |
1 11 21 31 41 51 | | | | | | 1 EKNNLKAKEG KETRDVREEE EEFDFGLGML SLNKIKREAK HVDKVDDSVD PLFKSSAFPQ 60 61 SPIRAYGSTT RTSSASGKPF RDNRSFNAFS VLTLENMASA NALPPVDYVI KSIYRTTVLV 120 121 NDIRLMVRCM DCIELSKNLR ALKKKTMEDI SKLKGISKPS P |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.