| Protein: | ATG1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 897 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..897] | [1..897] |
|
|
0.0 | [14..896] | [3..800] |
|
|
0.0 | [17..893] | [2..787] |
|
|
0.0 | [15..897] | [5..811] |
|
|
0.0 | [4..693] | [2..615] |
|
|
0.0 | [4..693] | [2..615] |
|
|
0.0 | [21..891] | [4..824] |
|
|
0.0 | [2..692] | [35..646] |
|
|
0.0 | [15..753] | [5..687] |
|
Region A: Residues: [1-74] |
1 11 21 31 41 51
| | | | | |
1 MGDIKNKDHT TSVNHNLMAS AGNYTAEKEI GKGSFATVYR GHLTSDKSQH VAIKEVSRAK 60
61 LKNKKLLENL EIEI
|
|
Region B: Residues: [88-104] |
1 11 21 31 41 51
| | | | | |
1 LIDCERTSTD FYLIMEY
|
| Detection Method: |  |
| Confidence: | 384.9794 |
| Match: | 1fotA_ |
| Description: | cAMP-dependent PK, catalytic subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [75-87] |
1 11 21 31 41 51
| | | | | |
1 AILKKIKHPH IVG
|
|
Region B: Residues: [105-427] |
1 11 21 31 41 51
| | | | | |
1 CALGDLTFLL KRRKELMENH PLLRTVFEKY PPPSENHNGL HRAFVLSYLQ QLASALKFLR 60
61 SKNLVHRDIK PQNLLLSTPL IGYHDSKSFH ELGFVGIYNL PILKIADFGF ARFLPNTSLA 120
121 ETLCGSPLYM APEILNYQKY NAKADLWSVG TVVFEMCCGT PPFRASNHLE LFKKIKRAND 180
181 VITFPSYCNI EPELKELICS LLTFDPAQRI GFEEFFANKV VNEDLSSYEL EDDLPELESK 240
241 SKGIVESNMF VSEYLSKQPK SPNSNLAGHQ SMADNPAELS DALKNSNILT APAVKTDHTQ 300
301 AVDKKASNNK YHNSLVSDRS FER
|
| Detection Method: | |
| Confidence: | 384.9794 |
| Match: | 1fotA_ |
| Description: | cAMP-dependent PK, catalytic subunit |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [428-897] |
1 11 21 31 41 51
| | | | | |
1 EYVVVEKKSV EVNSLADEVA QAGFNPNPIK HPTSTQNQNV LLNEQFSPNN QQYFQNQGEN 60
61 PRLLRATSSS SGGSDGSRRP SLVDRRLSIS SLNPSNALSR ALGIASTRLF GGANQQQQQQ 120
121 QITSSPPYSQ TLLNSQLFHE LTENIILRID HLQHPETLKL DNTNIVSILE SLAAKAFVVY 180
181 SYAEVKFSQI VPLSTTLKGM ANFENRRSMD SNAIAEEQDS DDAEEEDETL KKYKEDCLST 240
241 KTFGKGRTLS ATSQLSATFN KLPRSEMILL CNEAIVLYMK ALSILSKSMQ VTSNWWYESQ 300
301 EKSCSLRVNV LVQWLREKFN ECLEKADFLR LKINDLRFKH ASEVAENQTL EEKGSSEEPV 360
361 YLEKLLYDRA LEISKMAAHM ELKGENLYNC ELAYATSLWM LETSLDDDDF TNAYGDYPFK 420
421 TNIHLKSNDV EDKEKYHSVL DENDRIIIRK YIDSIANRLK ILRQKMNHQN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [678-897] |
1 11 21 31 41 51
| | | | | |
1 ATSQLSATFN KLPRSEMILL CNEAIVLYMK ALSILSKSMQ VTSNWWYESQ EKSCSLRVNV 60
61 LVQWLREKFN ECLEKADFLR LKINDLRFKH ASEVAENQTL EEKGSSEEPV YLEKLLYDRA 120
121 LEISKMAAHM ELKGENLYNC ELAYATSLWM LETSLDDDDF TNAYGDYPFK TNIHLKSNDV 180
181 EDKEKYHSVL DENDRIIIRK YIDSIANRLK ILRQKMNHQN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
