YRC Public Data Repository - Protein Structure Prediction

Protein:	YIP5
Organism:	Saccharomyces cerevisiae
Length:	310 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIP5.

Description	E-value	Query Range	Subject Range
HGNC:25231\|Ensem... - domain family, member 1 gi\|117644356, gi... - gi\|208965706\|dbj\|BAG72867.1\| Yip1 domain family, member 1 [synthetic construct], gi\|117644356\|emb\|CA... YIPF1 - Yip1 domain family, member 1	340.0	[0..14]	[310..5]
YIPF1_PONAB - Protein YIPF1 OS=Pongo abelii GN=YIPF1 PE=2 SV=1 YIPF1_PONPY - Protein YIPF1 - Pongo pygmaeus (Orangutan)	340.0	[0..14]	[310..5]
gi\|109004893 - gi\|109004893\|ref\|XP_001112998.1\| PREDICTED: similar to Yip1 domain family, member 1 [Macaca mulatta]	340.0	[0..14]	[310..5]
gi\|114556685 - gi\|114556685\|ref\|XP_001148917.1\| PREDICTED: Yip1 domain family, member 1 [Pan troglodytes]	339.0	[0..14]	[310..5]
gi\|76613824, gi\|... - gi\|76613832\|ref\|XP_589144.2\| PREDICTED: similar to Yip1 domain family, member 1 isoform 1 [Bos tauru...	329.0	[0..14]	[310..5]
YIPF1_MOUSE - Protein YIPF1 OS=Mus musculus GN=Yipf1 PE=2 SV=1	329.0	[0..14]	[310..5]
YIPF1_RAT - Protein YIPF1 OS=Rattus norvegicus GN=Yipf1 PE=2 SV=1	325.0	[0..14]	[310..5]
gi\|73956309, gi\|... - gi\|73956313\|ref\|XP_546701.2\| PREDICTED: similar to Yip1 domain family, member 1 isoform 1 [Canis fam...	325.0	[0..14]	[310..5]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSNNSSFLD IDDDLEGVDD FGNEPNPFDD ATVPDSPNMN NSTAGKGSEF YNTTGSKAES  60
   61 APLQGQMDPP AYDQVIGQND NDGLGRNGLR PGLINYYSKY FQIDLTQFKK RLSAVLTFRN 120
  121 DHNSESNEDN TDLYGAVWIT ATVVMINFTM SRGLNFIISD VIEGVKTGED IDRASQFKKL 180
  181 LHSIWLFYGY TFGVPFITMQ VL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [203-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRDEHSERNR SFKSVPELIS VYGYANLIWI PVCVILNILD MSKRLRTVQA IQWAIVALGW  60
   61 AQSSYFLNSQ ISSNNNTETQ SNGKFSLSII VVVALHTLFC LLFRFIIF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.933	N/A	N/A	a.7.7	BAG domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits