YRC Public Data Repository - Protein Structure Prediction

Protein:	YIP5
Organism:	Saccharomyces cerevisiae
Length:	310 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIP5.

Description	E-value	Query Range	Subject Range
HGNC:25231\|Ensem... - domain family, member 1 gi\|117644356, gi... - gi\|208965706\|dbj\|BAG72867.1\| Yip1 domain family, member 1 [synthetic construct], gi\|117644356\|emb\|CA... YIPF1 - Yip1 domain family, member 1	340.0	[0..14]	[310..5]
YIPF1_PONAB - Protein YIPF1 OS=Pongo abelii GN=YIPF1 PE=2 SV=1 YIPF1_PONPY - Protein YIPF1 - Pongo pygmaeus (Orangutan)	340.0	[0..14]	[310..5]
gi\|109004893 - gi\|109004893\|ref\|XP_001112998.1\| PREDICTED: similar to Yip1 domain family, member 1 [Macaca mulatta]	340.0	[0..14]	[310..5]
gi\|114556685 - gi\|114556685\|ref\|XP_001148917.1\| PREDICTED: Yip1 domain family, member 1 [Pan troglodytes]	339.0	[0..14]	[310..5]
gi\|76613824, gi\|... - gi\|76613832\|ref\|XP_589144.2\| PREDICTED: similar to Yip1 domain family, member 1 isoform 1 [Bos tauru...	329.0	[0..14]	[310..5]
YIPF1_MOUSE - Protein YIPF1 OS=Mus musculus GN=Yipf1 PE=2 SV=1	329.0	[0..14]	[310..5]
YIPF1_RAT - Protein YIPF1 OS=Rattus norvegicus GN=Yipf1 PE=2 SV=1	325.0	[0..14]	[310..5]
gi\|73956309, gi\|... - gi\|73956313\|ref\|XP_546701.2\| PREDICTED: similar to Yip1 domain family, member 1 isoform 1 [Canis fam...	325.0	[0..14]	[310..5]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSNNSSFLD IDDDLEGVDD FGNEPNPFDD ATVPDSPNMN NSTAGKGSEF YNTTGSKAES  60
   61 APLQGQMDPP AYDQVIGQND NDGLGRNGLR PGLINYYSKY FQIDLTQFKK RLSAVLTFRN 120
  121 DHNSESNEDN TDLYGAVWIT ATVVMINFTM SRGLNFIISD VIEGVKTGED IDRASQFKKL 180
  181 LHSIWLFYGY TFGVPFITMQ VL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [203-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRDEHSERNR SFKSVPELIS VYGYANLIWI PVCVILNILD MSKRLRTVQA IQWAIVALGW  60
   61 AQSSYFLNSQ ISSNNNTETQ SNGKFSLSII VVVALHTLFC LLFRFIIF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.933	N/A	N/A	a.7.7	BAG domain
View	Download	0.933	N/A	N/A	a.7.7	BAG domain
View	Download	0.870	N/A	N/A	a.7.12	Description not found.
View	Download	0.859	N/A	N/A	a.24.28	Description not found.
View	Download	0.830	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.830	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.783	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.676	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.654	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.642	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits