YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RRT6
Organism: Saccharomyces cerevisiae
Length: 311 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRT6.

Description E-value Query
Range
Subject
Range
RRT6 - Putative protein of unknown function; non-essential gene identified in a screen for mutants with inc...
RRT6_YEAST - Regulator of rDNA transcription protein 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...
gi|151943665 - gi|151943665|gb|EDN61975.1| conserved protein [Saccharomyces cerevisiae YJM789]
0.0 [1..311] [1..311]

Back

Predicted Domain #1
Region A:
Residues: [1-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKASLNIAQ TKEIPLTDRR MGLRGWKACS RPHLLGRILL FMSILFITSA ELSSDVSSRE  60
   61 VYMPIFNNKL SFKVPPIKRS LLLGAALYED FEYSSNNSAS DGAFCTVFNA GMNDASREVV 120
  121 FEIHVMDVLQ EETDSSRFGG TSHERGRQSL GFSVFNNKNG DLLRSKKNLA SGTSVIEVNP 180
  181 GNCNEFLICF INLVYDGSWS SIDTEKSVTI KMTYNDKLDP DMLLHLVNQM TPQVVKALNT 240
  241 VSDGLFQIVS DTTLLQMESD RRDINEATYS YLIVGFVSLM VAQLISNIIV TTYLIIKIKS 300
  301 NPSSHIKKKG L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle