Protein: | RSM23 |
Organism: | Saccharomyces cerevisiae |
Length: | 488 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSM23.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..488] | [1..488] |
|
0.0 | [83..479] | [9..384] |
|
0.0 | [84..479] | [11..391] |
|
0.0 | [84..430] | [11..340] |
|
4.0E-97 | [83..481] | [8..387] |
|
2.0E-92 | [125..478] | [132..467] |
|
1.0E-88 | [113..369] | [118..397] |
Region A: Residues: [1-112] |
1 11 21 31 41 51 | | | | | | 1 MYKNIYICIL YIYINFYTSR ENINKRTSTS HVVIRIRIML RMSTSRFIGQ RLFTTARSLQ 60 61 AAKPAPKGKT QGFSKKSSSV SSYSSAKRVT PGSLYKNWTN TTHTAQLQQT AV |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.403 | a.74.1 | Cyclin-like |
View | Download | 0.387 | a.7.8 | GAT domain |
View | Download | 0.430 | a.24.4 | Hemerythrin |
View | Download | 0.401 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
View | Download | 0.465 | a.142.1 | PTS-regulatory domain, PRD |
View | Download | 0.467 | a.4.12 | TrpR-like |
View | Download | 0.465 | a.142.1 | PTS-regulatory domain, PRD |
View | Download | 0.430 | a.24.4 | Hemerythrin |
View | Download | 0.403 | a.74.1 | Cyclin-like |
View | Download | 0.401 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
View | Download | 0.381 | c.47.1 | Thioredoxin-like |
View | Download | 0.378 | a.60.9 | lambda integrase-like, N-terminal domain |
View | Download | 0.370 | a.74.1 | Cyclin-like |
View | Download | 0.347 | a.74.1 | Cyclin-like |
View | Download | 0.334 | d.26.1 | FKBP-like |
View | Download | 0.315 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
View | Download | 0.314 | a.75.1 | Ribosomal protein S7 |
View | Download | 0.301 | a.26.1 | 4-helical cytokines |
View | Download | 0.301 | a.74.1 | Cyclin-like |
View | Download | 0.297 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
View | Download | 0.290 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
View | Download | 0.260 | a.1.1 | Globin-like |
View | Download | 0.255 | a.61.1 | Retroviral matrix proteins |
View | Download | 0.242 | c.51.1 | Anticodon-binding domain of Class II aaRS |
View | Download | 0.232 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
View | Download | 0.229 | a.26.1 | 4-helical cytokines |
View | Download | 0.228 | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
View | Download | 0.225 | a.39.1 | EF-hand |
View | Download | 0.212 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
View | Download | 0.209 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.208 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
View | Download | 0.206 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
View | Download | 0.205 | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
Region A: Residues: [113-398] |
1 11 21 31 41 51 | | | | | | 1 PLALPIFNFD DISKTLNKVV SYSNKQYKSL HHLGSFKKSQ FNELFQKPVC LVREDATNSF 60 61 LKKLVSHPVK KFIITGEPGV GKTVLLSQAH AYAVDSKQII INISYPELFL NGRNDFSYDD 120 121 DLKLFIQPMY LKKLIRKILK ANDPALLKSI ELSKDYKFSN ANPKNASVKP FVTLNKTKNT 180 181 VLDLLSVMTH PHNRGKLMKA IIDELSVQSK VPIMFTVDNF SKVLTTAYSA YRNTENKQIY 240 241 SLDLQMGKLM MDIISGETKF ANGESSTILA ISGVDRTNKT LPVALG |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [399-488] |
1 11 21 31 41 51 | | | | | | 1 KIPVDPYVTR YHYEPKFVEL LQKGNVTEFE VPKLNKQEVN ELIDYYKQSN VLLDKDITGK 60 61 KWENLIDEKY FLSGNGNPRE LLKSLVLSHR |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.466 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.456 | a.28.1 | ACP-like |
View | Download | 0.400 | a.61.1 | Retroviral matrix proteins |
View | Download | 0.345 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
View | Download | 0.256 | c.54.1 | IIA domain of mannose transporter, IIA-Man |
View | Download | 0.234 | a.135.1 | Tetraspanin |
View | Download | 0.208 | a.56.1 | CO dehydrogenase ISP C-domain like |
Term | Confidence | Notes |
structural constituent of ribosome | 5.42139550243577 | bayes_pls_golite062009 |
structural molecule activity | 4.52418150951371 | bayes_pls_golite062009 |
binding | 2.00435458244286 | bayes_pls_golite062009 |
catalytic activity | 0.942640875796745 | bayes_pls_golite062009 |
motor activity | 0.934327429601554 | bayes_pls_golite062009 |
nucleic acid binding | 0.88509145478589 | bayes_pls_golite062009 |
cytoskeletal protein binding | 0.482433345604081 | bayes_pls_golite062009 |
protein binding | 0.409258528033042 | bayes_pls_golite062009 |
microtubule motor activity | 0.381564091226657 | bayes_pls_golite062009 |
DNA binding | 0.368768953337555 | bayes_pls_golite062009 |
purine nucleotide binding | 0.354154818458687 | bayes_pls_golite062009 |
purine ribonucleotide binding | 0.35085688811866 | bayes_pls_golite062009 |
ribonucleotide binding | 0.350844329183388 | bayes_pls_golite062009 |
nucleotide binding | 0.350227693353399 | bayes_pls_golite062009 |
transcription regulator activity | 0.181434122054025 | bayes_pls_golite062009 |
translation regulator activity | 0.165004576559811 | bayes_pls_golite062009 |
translation factor activity, nucleic acid binding | 0.144513585153713 | bayes_pls_golite062009 |
RNA binding | 0.10404338295854 | bayes_pls_golite062009 |