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View Structure Prediction Details

Protein: CWC23
Organism: Saccharomyces cerevisiae
Length: 347 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CWC23.

Description E-value Query
Range
Subject
Range
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
2.0E-47 [25..274] [43..299]
gi|220946754 - gi|220946754|gb|ACL85920.1| CG10565-PA [synthetic construct]
FBpp0293954, CG1... - This gene is referred to in FlyBase by the symbol Dmel\CG10565 (CG10565, FBgn0037051). It is a prote...
1.0E-44 [38..275] [31..276]
gi|8978347, gi|1... - gi|8978347|dbj|BAA98200.1| cell division related protein-like [Arabidopsis thaliana], gi|15239928|re...
2.0E-44 [29..272] [45..304]
gi|19113076 - gi|19113076|ref|NP_596284.1| hypothetical protein SPBC1778.01c [Schizosaccharomyces pombe 972h-]
gi|19113076, gi|... - gi|2276350|emb|CAB10796.1| SPBC1778.01c [Schizosaccharomyces pombe], ref|NP_596284.1| zuotin like; p...
2.0E-43 [71..272] [1..203]
gi|5577977 - gi|5577977|gb|AAD45407.1|AF118853_1 gliosarcoma-related antigen MIDA1 [Rattus norvegicus]
2.0E-42 [34..282] [49..296]
gi|4633127, gi|4... - gi|4633129|gb|AAD26633.1|AF110135_1 GlsA [Volvox carteri f. nagariensis], gi|4633127|gb|AAD26632.1|A...
5.0E-42 [73..272] [108..312]
gi|1770454 - gi|1770454|emb|CAA66913.1| M-phase phosphoprotein 11 [Homo sapiens]
2.0E-40 [32..266] [61..294]
DNJC2_MOUSE - DnaJ homolog subfamily C member 2 OS=Mus musculus GN=Dnajc2 PE=1 SV=2
3.0E-40 [34..266] [49..280]

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Predicted Domain #1
Region A:
Residues: [1-65]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIYTHTHIY ISHIYIYICI YICKPHYFVF SFLCFPCILS RKTLEDESKI KKQVHRRTTS  60
   61 LATTM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [66-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGHELEDVIN QRLNLYDVLE LPTPLDVHTI YDDLPQIKRK YRTLALKYHP DKHPDNPSII  60
   61 HKFHLLSTAT NILTNADVRP HYDRWLIEFL RKTNDIERNK LIQKLEESES STIPTTTP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.211549
Match: 1xbl__
Description: DnaJ chaperone, N-terminal (J) domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [184-347]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPDLLQIQRH GELLRKLKHF NLPYGDWKHL NTQDQENASQ HPYYDCSTLR IVLDNFLQSN  60
   61 NKSNCLSHLR NQVFITLSAN EIYDIYFSER NNYSKDDSII IYTVFDTPIT AQHVFRNWSS 120
  121 GNLIPTVKDI SPLIPLHYYS DFNLETELND DIARLVSNEP ILLD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle