YRC Public Data Repository - Protein Structure Prediction

Protein:	SCS3
Organism:	Saccharomyces cerevisiae
Length:	380 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCS3.

Description	E-value	Query Range	Subject Range
gi\|45270888 - gi\|45270888\|gb\|AAS56825.1\| YGL126W [Saccharomyces cerevisiae]	715.0	[0..1]	[380..1]
gi\|44980611 - gi\|44980611\|gb\|AAS50532.1\| AAR165Wp [Ashbya gossypii ATCC 10895] gi\|45184990, gi\|... - gi\|45184990\|ref\|NP_982708.1\| AAR165Wp [Ashbya gossypii ATCC 10895], gi\|44980611\|gb\|AAS50532.1\| AAR16...	231.0	[0..6]	[370..11]
gi\|49526577 - gi\|49526577\|emb\|CAG60204.1\| unnamed protein product [Candida glabrata] gi\|50289671, gi\|... - gi\|50289671\|ref\|XP_447267.1\| hypothetical protein CAGL0I00330g [Candida glabrata CBS138], gi\|4952657...	202.0	[0..11]	[370..12]
gi\|49644648, gi\|... - gi\|50310979\|ref\|XP_455512.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644648\|emb\|CAG9822... gi\|49644648\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140]	166.0	[0..12]	[370..7]
SPBC543.08 - phosphoinositide biosynthesis protein SCS3_SCHPO - FIT family protein scs3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=scs3 PE=3 SV=1	143.0	[0..17]	[120..33]
orf19.5291, orf1... - orf19.5291 CGDID:CAL0003671 Assembly 19, Contig19-10225 (1922, 2923) CDS, translated using codon tab... gi\|46438710, gi\|... - gi\|68477724\|ref\|XP_717014.1\| hypothetical protein CaO19.12749 [Candida albicans SC5314], gi\|68477565...	83.0	[0..36]	[250..61]
gi\|66847969, gi\|... - gi\|70990976\|ref\|XP_750337.1\| inositol phospholipid biosynthesis protein Scs3 [Aspergillus fumigatus... gi\|159130811 - gi\|159130811\|gb\|EDP55924.1\| inositol phospholipid biosynthesis protein Scs3, putative [Aspergillus ...	79.0	[0..11]	[130..24]
gi\|111056787, gi... - gi\|169622978\|ref\|XP_001804897.1\| hypothetical protein SNOG_14715 [Phaeosphaeria nodorum SN15], gi\|11...	71.0	[0..13]	[120..43]
gi\|49653745, gi\|... - gi\|50419113\|ref\|XP_458079.1\| hypothetical protein DEHA0C10153g [Debaryomyces hansenii CBS767], gi\|49...	69.0	[0..36]	[120..112]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKWFNAIH LLVCPLTVLV GYLMNAYGYG AALQATLNKD GLVNAMLVKK GWFWTSLVGW  60
   61 WCIIRYRAVP GATGRDRRHI VQSFKRYAIL TVWWYVFTQG IWFGVGPIMD LVFVYTGGHC 120
  121 HYDVFDD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.817	N/A	N/A	a.204.1	Description not found.

Predicted Domain #2

Region A:
Residues: [128-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGHVNEDFQG SVTRTNRALA LIHNVLTLHG HHQEHRQQQL WDRSIGSIQG ALQATQPKTP  60
   61 KNVTASAAAA INTFIHDQMH RWQGPLTTSA QCRRFGGHWA GGH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [231-380]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPSGHVFLAT LMCMFLLGEL RVFGRRALAH LYAQKWQLVR LVTRLFDTGP LWTWRRCGGG  60
   61 SMTCGARLWR AIVEPPVTCA AALLRLTRCI ACDHPVIILL TLLVTWLWQL LLTAVASRFH 120
  121 TVREHMSGLL AAYIVTGLVY ARDAAALRPV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits