YRC Public Data Repository - Protein Structure Prediction

Protein:	ABC1
Organism:	Saccharomyces cerevisiae
Length:	501 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ABC1.

Description	E-value	Query Range	Subject Range
COQ8_YEAST - Atypical kinase COQ8, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COQ8... ABC1 - Protein required for ubiquinone (coenzyme Q) biosynthesis and for respiratory growth; exhibits genet... gi\|151943691 - gi\|151943691\|gb\|EDN62001.1\| activity of bc(1) complex-related protein [Saccharomyces cerevisiae YJM7... gi\|207345402 - gi\|207345402\|gb\|EDZ72235.1\| YGL119Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190407070 - gi\|190407070\|gb\|EDV10337.1\| protein ABC1, mitochondrial precursor [Saccharomyces cerevisiae RM11-1a]	0.0	[1..501]	[1..501]
ABC1_ARATH - Protein ABC transporter 1, mitochondrial OS=Arabidopsis thaliana GN=ABC1 PE=2 SV=1	0.0	[21..497]	[130..602]
ABCI_SCHPO - Protein ABC1 homolog, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=abc1 P... abc1 - ABC1 kinase family protein	0.0	[30..493]	[136..601]
gi\|28922753, gi\|... - gi\|32405022\|ref\|XP_323124.1\| hypothetical protein ( (AL451018) probable abc1 protein precursor [Neur... gi\|85101761 - gi\|85101761\|ref\|XP_961212.1\| hypothetical protein NCU03823 [Neurospora crassa OR74A]	0.0	[31..496]	[289..764]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[68..493]	[1..425]
gi\|11280305 - pir\|\|B81184 ubiquinone biosynthesis protein AarF NMB0559 [imported] - Neisseria meningitidis (strain... UBIB_NEIMB - Probable protein kinase UbiB OS=Neisseria meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1 UBIB_NEIMB - Probable ubiquinone biosynthesis protein UbiB OS=Neisseria meningitidis serogroup B GN=ubiB PE=3 SV=...	0.0	[79..501]	[17..425]
gi\|16304010 - gi\|16304010\|gb\|AAL16909.1\|AF420471_1 ABC1 protein [Magnaporthe grisea]	0.0	[36..495]	[248..715]
gi\|7450863 - pir\|\|S77114 ABC transporter sll1770 - Synechocystis sp. (strain PCC 6803) Y1770_SYNY3 - Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1770 PE=3 SV=1 YH70_SYNY3, Y177... - (P73627) Hypothetical protein sll1770, Uncharacterized protein sll1770 OS=Synechocystis sp. (strain ...	1.0E-99	[34..499]	[7..458]
gi\|11280304 - pir\|\|G81917 probable ubiquinone biosynthesis protein NMA0741 [imported] - Neisseria meningitidis (st... UBIB_NEIMA - Probable ubiquinone biosynthesis protein UbiB OS=Neisseria meningitidis serogroup A GN=ubiB PE=3 SV=... UBIB_NEIMA - Probable protein kinase UbiB OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=u...	2.0E-99	[79..501]	[17..425]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTNMVKLRN LRRLYCSSRL LRTIQNGRIS SVSSISLSKK YTTKSAKEGE ENVERKHEEE  60
   61 KKDTLKSSSV PTSRISRLFH YGSLAAGVGM NAAAKGISEV AKGN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.316	a.1.1	Globin-like
View	Download	0.316	a.1.1	Globin-like
View	Download	0.360	d.95.2	Homing endonucleases
View	Download	0.360	d.95.2	Homing endonucleases
View	Download	0.204	a.150.1	Anti-sigma factor AsiA
View	Download	0.204	a.150.1	Anti-sigma factor AsiA

Predicted Domain #2

Region A:
Residues: [105-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPTWKSLILS DSNIDRITNK FSKMRGVALK IGQLLSFQDE KVLPKELYEI LSRVQNSANH  60
   61 MPQRQLEKVM AKELGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.154902
Match:	1qcfA_
Description:	Hemapoetic cell kinase Hck; Hemopoetic cell kinase Hck; Haemopoetic cell kinase Hck
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [181-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NWKTKFSKFD KIPMAAASIG QVHAAELPSG QRVVVKIQYP GVKESIDSDL NSLLMLLTAS  60
   61 SLLPKGLFLD KTIANARTEL KWECDYNREA RALQKFEALL KDDPAFEVPH VFPEYTTDNI 120
  121 ITMTRMEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.69897
Match:	1a06__
Description:	Calmodulin-dependent protein kinase
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [309-501]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEIMKLPKAS QETKNFISEN IMRLCLEEIA TFKYMQTDPN WANFLYNGRT KKIELLDFGA  60
   61 SRPFAEDFIL KYRKLLTYAT LRDRKGAYEM SVQLGYLTGL ESQSMKDAHV DSVLTLGEPF 120
  121 RGDVDKSFDF KDQTVSDRIR GNIGLMLNER LCPPPEETYS LHRKFSGIFL LCARMGASVH 180
  181 CAKLFKEIFA YKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.69897
Match:	1a06__
Description:	Calmodulin-dependent protein kinase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits