YRC Public Data Repository - Protein Structure Prediction

Protein:	ABC1
Organism:	Saccharomyces cerevisiae
Length:	501 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ABC1.

Description	E-value	Query Range	Subject Range
COQ8_YEAST - Atypical kinase COQ8, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COQ8... ABC1 - Protein required for ubiquinone (coenzyme Q) biosynthesis and for respiratory growth; exhibits genet... gi\|151943691 - gi\|151943691\|gb\|EDN62001.1\| activity of bc(1) complex-related protein [Saccharomyces cerevisiae YJM7... gi\|207345402 - gi\|207345402\|gb\|EDZ72235.1\| YGL119Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190407070 - gi\|190407070\|gb\|EDV10337.1\| protein ABC1, mitochondrial precursor [Saccharomyces cerevisiae RM11-1a]	0.0	[1..501]	[1..501]
ABC1_ARATH - Protein ABC transporter 1, mitochondrial OS=Arabidopsis thaliana GN=ABC1 PE=2 SV=1	0.0	[21..497]	[130..602]
ABCI_SCHPO - Protein ABC1 homolog, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=abc1 P... abc1 - ABC1 kinase family protein	0.0	[30..493]	[136..601]
gi\|28922753, gi\|... - gi\|32405022\|ref\|XP_323124.1\| hypothetical protein ( (AL451018) probable abc1 protein precursor [Neur... gi\|85101761 - gi\|85101761\|ref\|XP_961212.1\| hypothetical protein NCU03823 [Neurospora crassa OR74A]	0.0	[31..496]	[289..764]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[68..493]	[1..425]
gi\|11280305 - pir\|\|B81184 ubiquinone biosynthesis protein AarF NMB0559 [imported] - Neisseria meningitidis (strain... UBIB_NEIMB - Probable protein kinase UbiB OS=Neisseria meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1 UBIB_NEIMB - Probable ubiquinone biosynthesis protein UbiB OS=Neisseria meningitidis serogroup B GN=ubiB PE=3 SV=...	0.0	[79..501]	[17..425]
gi\|16304010 - gi\|16304010\|gb\|AAL16909.1\|AF420471_1 ABC1 protein [Magnaporthe grisea]	0.0	[36..495]	[248..715]
gi\|7450863 - pir\|\|S77114 ABC transporter sll1770 - Synechocystis sp. (strain PCC 6803) Y1770_SYNY3 - Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1770 PE=3 SV=1 YH70_SYNY3, Y177... - (P73627) Hypothetical protein sll1770, Uncharacterized protein sll1770 OS=Synechocystis sp. (strain ...	1.0E-99	[34..499]	[7..458]
gi\|11280304 - pir\|\|G81917 probable ubiquinone biosynthesis protein NMA0741 [imported] - Neisseria meningitidis (st... UBIB_NEIMA - Probable ubiquinone biosynthesis protein UbiB OS=Neisseria meningitidis serogroup A GN=ubiB PE=3 SV=... UBIB_NEIMA - Probable protein kinase UbiB OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=u...	2.0E-99	[79..501]	[17..425]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTNMVKLRN LRRLYCSSRL LRTIQNGRIS SVSSISLSKK YTTKSAKEGE ENVERKHEEE  60
   61 KKDTLKSSSV PTSRISRLFH YGSLAAGVGM NAAAKGISEV AKGN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [105-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPTWKSLILS DSNIDRITNK FSKMRGVALK IGQLLSFQDE KVLPKELYEI LSRVQNSANH  60
   61 MPQRQLEKVM AKELGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.154902
Match:	1qcfA_
Description:	Hemapoetic cell kinase Hck; Hemopoetic cell kinase Hck; Haemopoetic cell kinase Hck
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [181-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NWKTKFSKFD KIPMAAASIG QVHAAELPSG QRVVVKIQYP GVKESIDSDL NSLLMLLTAS  60
   61 SLLPKGLFLD KTIANARTEL KWECDYNREA RALQKFEALL KDDPAFEVPH VFPEYTTDNI 120
  121 ITMTRMEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.69897
Match:	1a06__
Description:	Calmodulin-dependent protein kinase
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [309-501]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEIMKLPKAS QETKNFISEN IMRLCLEEIA TFKYMQTDPN WANFLYNGRT KKIELLDFGA  60
   61 SRPFAEDFIL KYRKLLTYAT LRDRKGAYEM SVQLGYLTGL ESQSMKDAHV DSVLTLGEPF 120
  121 RGDVDKSFDF KDQTVSDRIR GNIGLMLNER LCPPPEETYS LHRKFSGIFL LCARMGASVH 180
  181 CAKLFKEIFA YKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.69897
Match:	1a06__
Description:	Calmodulin-dependent protein kinase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits