| Protein: | CDC20 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 610 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC20.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [4..607] | [915..1490] |
|
|
0.0 | [158..607] | [823..1257] |
|
Region A: Residues: [1-177] |
1 11 21 31 41 51
| | | | | |
1 MPESSRDKGN AAISGNRSVL SIASPTKLNI LSSDWSRNQG KVSKNSLKRS SSLNIRNSKR 60
61 PSLQASANSI YSRPKITIGA PPLIRRDSSF FKDEFDAKKD KATFSAYSSR SYPTIGSESV 120
121 VSQTSLSQPT TSREVDEQFT VAADRYIPIL QGASQNKVDP ETLHEALPPP NASPISH
|
| Detection Method: |  |
| Confidence: | 7.154902 |
| Match: | 1c5kA_ |
| Description: | TolB, C-terminal domain; TolB, N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transporter activity | 3.24355753923746 | bayes_pls_golite062009 |
|
Region A: Residues: [178-437] |
1 11 21 31 41 51
| | | | | |
1 LRAQTKIVFK QNVAEACGLD MNKRILQYMP EPPKCSSLRQ KSYIMKKRTH YSYQQEQKIP 60
61 DLIKLRKINT NPERILDAPG FQDDFYLNLL SWSKKNVLAI ALDTALYLWN ATTGDVSLLT 120
121 DFENTTICSV TWSDDDCHIS IGKEDGNTEI WDVETMSLIR TMRSGLGVRI GSLSWLDTLI 180
181 ATGSRSGEIQ INDVRIKQHI VSTWAEHTGE VCGLSYKSDG LQLASGGNDN TVMIWDTRTS 240
241 LPQFSKKTHT AAVKALSWCP
|
| Detection Method: | |
| Confidence: | 7.154902 |
| Match: | 1c5kA_ |
| Description: | TolB, C-terminal domain; TolB, N-terminal domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [438-610] |
1 11 21 31 41 51
| | | | | |
1 YSPNILASGG GQTDKHIHFW NSITGARVGS INTGSQVSSL HWGQSHTSTN GGMMNKEIVA 60
61 TGGNPENAIS VYNYETKFKV AEVVHAHEAR ICCSQLSPDG TTLATVGGDE NLKFYKIFDP 120
121 RCTGRSREDG LMDGMLGLIG KEGCRTNDKE NRSKNSSEIH TRRPSSTSQY LIR
|
| Detection Method: | |
| Confidence: | 123.512579 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
