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View Structure Prediction Details

Protein: NSA1
Organism: Saccharomyces cerevisiae
Length: 463 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NSA1.

Description E-value Query
Range
Subject
Range
NSA1 - Constituent of 66S pre-ribosomal particles, involved in 60S ribosomal subunit biogenesis
NSA1_YEAST - Ribosome biogenesis protein NSA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSA1 PE...
0.0 [1..452] [1..452]
gi|8922422, gi|7... - gi|8922422|ref|NP_060563.1| WD repeat domain 74 [Homo sapiens], gi|7022471|dbj|BAA91610.1| unnamed p...
0.0 [151..449] [96..353]
WDR74_MOUSE - WD repeat-containing protein 74 OS=Mus musculus GN=Wdr74 PE=2 SV=1
0.0 [151..449] [96..353]
CE13313 - status:Confirmed UniProt:O45757 protein_id:CAB03312.1
2.0E-78 [145..440] [82..328]
SPBC83.15 - ribosome biogenesis protein Nsa1
NSA1_SCHPO - Ribosome biogenesis protein nsa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nsa1 PE=3...
4.0E-66 [174..412] [117..344]
gi|15218889, gi|... - gi|15218889|ref|NP_174226.1| transducin family protein / WD-40 repeat family protein [Arabidopsis th...
3.0E-65 [208..443] [181..384]

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Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLVSCVDS GSIKEVLCNI GTDTSVQSAL QPFHVAPHLA EGLKAYVDRM WVISEDEAIL  60
   61 ARNSGVVELV KISKHLKENE ALQVDPKGES KNEKSLSDDL P

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [102-463]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KFDISEFEIT SSVSDLFDDA KLESLSSKSV KRTKLVDGFV TLCPIKKDSS NNTFVAATKS  60
   61 GLLHIIKKGE DKKLIKLASL GLKAPVEFLQ LYDLEDTDTD KYIFAYGGEE NLIKLVEIDS 120
  121 SFQSLKQIWE AKNVKNDRLD MRVPVWPMAL RFLEPSPGKT EKGKLNYQFA AITRWSHLTK 180
  181 YSTQHGRKPF AQIDLLPNRE PLSQMEVFDA KGENVVSSLG NFQSETFNEL NVITTDYKKN 240
  241 VFKFDGNGRM LGKVGRDDIT GSSTYIHVHD GKYLLQGGLD RYVRIFDIKT NKMLVKVYVG 300
  301 SRINFIVMLD DVEIEMPLSP SAKAAKGKQK RKVTELEEDA DELWNKLEGK VAASKASKKS 360
  361 KI

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 11.75
Match: 1scgB
Description: No description for 1scgB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle