| Protein: | MAD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 749 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MAD1.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-88 | [1..746] | [911..1628] |
|
|
9.0E-87 | [1..746] | [917..1634] |
|
|
1.0E-86 | [1..746] | [912..1629] |
|
|
1.0E-86 | [1..746] | [914..1631] |
|
|
2.0E-86 | [1..746] | [911..1628] |
|
|
2.0E-86 | [1..746] | [913..1630] |
|
Region A: Residues: [1-275] |
1 11 21 31 41 51
| | | | | |
1 MDVRAALQCF FSALSGRFTG KKLGLEIYSI QYKMSNSGGS SPFLESPGGS PDVGSTNGQS 60
61 NRQIQALQFK LNTLQNEYEI EKLQLQKQTN ILEKKYKATI DELEKALNDT KYLYESNDKL 120
121 EQELKSLKER SANSMNDKDK CIEELRTTLQ NKDLEMETLR QQYDSKLSKV TNQCDHFKLE 180
181 AESSHSLLMK YEKEIKRQSV DIKDLQHQVM EKDDELSSVK ASKMINSHPN YSTEEFNELT 240
241 EMNKMIQDQV QYTKELELAN MQQANELKKL KQSQD
|
| Detection Method: |  |
| Confidence: | 16.154902 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [276-364] |
1 11 21 31 41 51
| | | | | |
1 TSTFWKLENE KLQNKLSQLH VLESQYENLQ LENIDLKSKL TKWEIYNDSD DDDDNNVNNN 60
61 DNNNNNKNDN NNDNNNDTSN NNNINNNNR
|
| Detection Method: | |
| Confidence: | 11.69897 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [365-446] |
1 11 21 31 41 51
| | | | | |
1 TKNNIRNNPE EIIRDWKLTK KECLILTDMN DKLRLDNNNL KLLNDEMALE RNQILDLNKN 60
61 YENNIVNLKR LNHELEQQKS LS
|
| Detection Method: | |
| Confidence: | 11.69897 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [447-508] |
1 11 21 31 41 51
| | | | | |
1 FEECRLLREQ LDGLYSAQNN ALLEVENSET HASNKNVNED MNNLIDTYKN KTEDLTNELK 60
61 KL
|
| Detection Method: | |
| Confidence: | 11.69897 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [509-619] |
1 11 21 31 41 51
| | | | | |
1 NDQLLSNSND VETQRKKRKL TSDQIGLNYS QRLNELQLEN VSVSRELSKA QTTIQLLQEK 60
61 LEKLTKLKEK KIRILQLRDG PFIKDQFIKK NKLLLLEKEN ADLLNELKKN N
|
| Detection Method: | |
| Confidence: | 11.69897 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [620-749] |
1 11 21 31 41 51
| | | | | |
1 PAVETVPISV YDSLNFELKQ FEQEVFKSNK RFSRLKQVFN NKSLEFIDVV NSLLGFKLEF 60
61 QQDSRVKIFS CFKPEKYLIA DLNENTLKSN LDADIEGWDD LMNLWVEDRG QLPCFLATIT 120
121 LRLWEQRQAK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.837 | 0.313 | nuclear pore | a.25.1 | Ferritin-like |
