| Protein: | DBP3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 523 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DBP3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [19..498] | [86..580] |
|
|
0.0 | [10..497] | [123..620] |
|
|
0.0 | [20..498] | [87..580] |
|
|
0.0 | [7..518] | [73..596] |
|
|
0.0 | [20..498] | [87..580] |
|
|
0.0 | [10..497] | [123..620] |
|
|
0.0 | [20..496] | [16..497] |
|
Region A: Residues: [1-78] |
1 11 21 31 41 51
| | | | | |
1 MTKEEIADKK RKVVDEEVIE KKKSKKHKKD KKDKKEKKDK KHKKHKKEKK GEKEVEVPEK 60
61 ESEKKPEPTS AVASEFYV
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.497 | a.28.1 | ACP-like |
| View | Download | 0.452 | d.95.2 | Homing endonucleases |
| View | Download | 0.405 | d.17.1 | Cystatin/monellin |
| View | Download | 0.470 | a.60.8 | HRDC-like |
| View | Download | 0.452 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.376 | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.367 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.359 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.311 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.293 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.268 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.250 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.210 | c.55.5 | MTH1175-like |
| View | Download | 0.208 | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.203 | a.74.1 | Cyclin-like |
|
Region A: Residues: [79-324] |
1 11 21 31 41 51
| | | | | |
1 QSEALTSLPQ SDIDEYFKEN EIAVEDSLDL ALRPLLSFDY LSLDSSIQAE ISKFPKPTPI 60
61 QAVAWPYLLS GKDVVGVAET GSGKTFAFGV PAISHLMNDQ KKRGIQVLVI SPTRELASQI 120
121 YDNLIVLTDK VGMQCCCVYG GVPKDEQRIQ LKKSQVVVAT PGRLLDLLQE GSVDLSQVNY 180
181 LVLDEADRML EKGFEEDIKN IIRETDASKR QTLMFTATWP KEVRELASTF MNNPIKVSIG 240
241 NTDQLT
|
| Detection Method: | |
| Confidence: | 636.9794 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [325-523] |
1 11 21 31 41 51
| | | | | |
1 ANKRITQIVE VVDPRGKERK LLELLKKYHS GPKKNEKVLI FALYKKEAAR VERNLKYNGY 60
61 NVAAIHGDLS QQQRTQALNE FKSGKSNLLL ATDVAARGLD IPNVKTVINL TFPLTVEDYV 120
121 HRIGRTGRAG QTGTAHTLFT EQEKHLAGGL VNVLNGANQP VPEDLIKFGT HTKKKEHSAY 180
181 GSFFKDVDLT KKPKKITFD
|
| Detection Method: | |
| Confidence: | 636.9794 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
|
