| Protein: | YBP2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 641 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBP2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..641] | [1..641] |
|
Region A: Residues: [1-50] |
1 11 21 31 41 51
| | | | | |
1 MYNEQVNSGK SIKEKERYLD ALLKILKDNP VTLKEIGWDL PKGLLQFFSR
|
|
Region B: Residues: [525-531] |
1 11 21 31 41 51
| | | | | |
1 EQQNPGN
|
| Detection Method: |  |
| Confidence: | 7.77 |
| Match: | 1bgxT |
| Description: | 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [51-101] |
1 11 21 31 41 51
| | | | | |
1 KNINVNIHLV FSPLVSSVME CFNELAINGN PKECLLTACE LVSTLHIVLT E
|
| Detection Method: | |
| Confidence: | 7.77 |
| Match: | 1bgxT |
| Description: | 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [102-293] |
1 11 21 31 41 51
| | | | | |
1 TGDSDEENED LNDSNRNDAS NITDELSVIT PEIGHYMAKN TVEFIPNLKI YVLFEFMSLL 60
61 LKRVDTLYPS KFLAMVTSAI IKYVTTNVQA MDDPHFILRI VYNFCTNYSP AQPSASLTDG 120
121 ISTNDLEKIH DDESALQKKL LANLSVFVIS NCLKNHPGNI DKIYFKTLMH KKTDENEIDA 180
181 SVLQICHQYY EY
|
|
Region B: Residues: [347-524] |
1 11 21 31 41 51
| | | | | |
1 IKKLADEKNL ELDQYGVVIL SAIHYSKNGT HLLPQIDIQS AIYLYLRCTT ASLFSEIYEN 60
61 KFLESSVRYW LWVSTTETST EKIKCALQEL PGHITTAFLQ MLLMKTCNES NNDTKLTEIT 120
121 LLRRLLYLMP ESTSFTFIFE TLLHCPYITA KIAVLDILRD MMIRSPEAAN RDETVGLI
|
|
Region C: Residues: [532-641] |
1 11 21 31 41 51
| | | | | |
1 TANSVPIMPT LPPRPYITIN EDRMASIHSI ALICFSAAKQ KKRTQGDLLL VLTYMKFFVS 60
61 LRNKWDLGLL TLINKEISES FQGEGEPELA FINISNNTLG EYIEEMNIRS
|
| Detection Method: | |
| Confidence: | 7.77 |
| Match: | 1bgxT |
| Description: | 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [294-346] |
1 11 21 31 41 51
| | | | | |
1 VTSLDVHMKE LLEKCLVESR SIYNSLLMNP AASTPEFKEE INQLVYEVSY AYQ
|
| Detection Method: | |
| Confidence: | 7.77 |
| Match: | 1bgxT |
| Description: | 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [543-641] |
1 11 21 31 41 51
| | | | | |
1 PPRPYITINE DRMASIHSIA LICFSAAKQK KRTQGDLLLV LTYMKFFVSL RNKWDLGLLT 60
61 LINKEISESF QGEGEPELAF INISNNTLGE YIEEMNIRS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.828 | a.24.17 | Group V grass pollen allergen |
