YRC Public Data Repository - Protein Structure Prediction

Protein:	AGA2
Organism:	Saccharomyces cerevisiae
Length:	87 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGA2.

Description	E-value	Query Range	Subject Range
gi\|24940402, gi\|... - gi\|24940402\|emb\|CAD56300.1\| a-agglutinin adhesion subunit [Saccharomyces paradoxus], gi\|24940400\|emb...	122.0	[0..1]	[87..1]
gi\|24940378 - gi\|24940378\|emb\|CAD56288.1\| a-agglutinin adhesion subunit [Saccharomyces pastorianus]	105.0	[0..1]	[87..1]
gi\|24940376 - gi\|24940376\|emb\|CAD56287.1\| a-agglutinin adhesion subunit [Saccharomyces bayanus]	103.0	[0..1]	[87..1]
gi\|50284813, gi\|... - gi\|50284813\|ref\|XP_444834.1\| hypothetical protein CAGL0A01584g [Candida glabrata CBS138], gi\|4952413... gi\|49524136 - gi\|49524136\|emb\|CAG57727.1\| unnamed protein product [Candida glabrata]	69.0	[0..6]	[68..7]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLLRCFSIF SVIASVLAQE LTTICEQIPS PTLESTPYSL STTTILANGK AMQGVFEYYK  60
   61 SVTFVSNCGS HPSTTSKGSP INTQYVF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits