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View Structure Prediction Details

Protein: AGA2
Organism: Saccharomyces cerevisiae
Length: 87 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGA2.

Description E-value Query
Range
Subject
Range
gi|24940402, gi|... - gi|24940402|emb|CAD56300.1| a-agglutinin adhesion subunit [Saccharomyces paradoxus], gi|24940400|emb...
122.0 [0..1] [87..1]
gi|24940378 - gi|24940378|emb|CAD56288.1| a-agglutinin adhesion subunit [Saccharomyces pastorianus]
105.0 [0..1] [87..1]
gi|24940376 - gi|24940376|emb|CAD56287.1| a-agglutinin adhesion subunit [Saccharomyces bayanus]
103.0 [0..1] [87..1]
gi|50284813, gi|... - gi|50284813|ref|XP_444834.1| hypothetical protein CAGL0A01584g [Candida glabrata CBS138], gi|4952413...
gi|49524136 - gi|49524136|emb|CAG57727.1| unnamed protein product [Candida glabrata]
69.0 [0..6] [68..7]

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Predicted Domain #1
Region A:
Residues: [1-87]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLLRCFSIF SVIASVLAQE LTTICEQIPS PTLESTPYSL STTTILANGK AMQGVFEYYK  60
   61 SVTFVSNCGS HPSTTSKGSP INTQYVF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.378 c.44.2 Enzyme IIB-cellobiose
View Download 0.353 a.76.1 Iron-dependent represor protein, dimerization domain
View Download 0.348 a.280.1 Description not found.
View Download 0.347 a.77.1 DEATH domain
View Download 0.344 f.15.1 Small-conductance potassium channel
View Download 0.344 f.15.1 Small-conductance potassium channel
View Download 0.341 a.35.1 lambda repressor-like DNA-binding domains
View Download 0.335 a.21.1 HMG-box


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle