| Protein: | EMP47 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 445 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EMP47.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..445] | [1..445] |
|
|
0.0 | [12..383] | [20..416] |
|
|
0.0 | [12..383] | [20..416] |
|
|
0.0 | [12..383] | [20..416] |
|
|
0.0 | [12..383] | [20..424] |
|
|
0.0 | [12..383] | [20..424] |
|
|
0.0 | [28..356] | [25..369] |
|
Region A: Residues: [1-265] |
1 11 21 31 41 51
| | | | | |
1 MMMLITMKST VLLSVFTVLA TWAGLLEAHP LGDTSDASKL SSDYSLPDLI NARKVPNNWQ 60
61 TGEQASLEEG RIVLTSKQNS KGSLWLKQGF DLKDSFTMEW TFRSVGYSGQ TDGGISFWFV 120
121 QDSNVPRDKQ LYNGPVNYDG LQLLVDNNGP LGPTLRGQLN DGQKPVDKTK IYDQSFASCL 180
181 MGYQDSSVPS TIRVTYDLED DNLLKVQVDN KVCFQTRKVR FPSGSYRIGV TAQNGAVNNN 240
241 AESFEIFKMQ FFNGVIEDSL IPNVN
|
| Detection Method: |  |
| Confidence: | 85.0 |
| Match: | 1gv9A_ |
| Description: | Carbohydrate-recognition domain of P58/ERGIC-53 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.52142098960755 | bayes_pls_golite062009 |
| transporter activity | 1.29150662073327 | bayes_pls_golite062009 |
| protein binding | 1.15590148654655 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.07075219961504 | bayes_pls_golite062009 |
| carbohydrate binding | 0.706875336696662 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.546512480767482 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.301823428566403 | bayes_pls_golite062009 |
|
Region A: Residues: [266-445] |
1 11 21 31 41 51
| | | | | |
1 AMGQPKLITK YIDQQTGKEK LIEKTAFDAD KDKITNYELY KKLDRVEGKI LANDINALET 60
61 KLNDVIKVQQ ELLSFMTTIT KQLSSKPPAN NEKGTSTDDA IAEDKENFKD FLSINQKLEK 120
121 VLVEQEKYRE ATKRHGQDGP QVDEIARKLM IWLLPLIFIM LVMAYYTFRI RQEIIKTKLL 180
181
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.819 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.743 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.728 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.693 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.688 | N/A | N/A | a.47.2 | t-snare proteins |
