| Protein: | PAB1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 577 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAB1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..577] | [1..577] |
|
|
0.0 | [29..573] | [2..604] |
|
|
0.0 | [32..572] | [5..607] |
|
|
0.0 | [29..573] | [2..624] |
|
|
0.0 | [29..573] | [2..624] |
|
|
0.0 | [29..566] | [2..616] |
|
|
0.0 | [16..576] | [7..637] |
|
Region A: Residues: [1-116] |
1 11 21 31 41 51
| | | | | |
1 MADITDKTAE QLENLNIQDD QKQAATGSES QSVENSSASL YVGDLEPSVS EAHLYDIFSP 60
61 IGSVSSIRVC RDAITKTSLG YAYVNFNDHE AGRKAIEQLN YTPIKGRLCR IMWSQR
|
| Detection Method: |  |
| Confidence: | 653.927757 |
| Match: | 1cvjA_ |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
|
Region A: Residues: [117-215] |
1 11 21 31 41 51
| | | | | |
1 DPSLRKKGSG NIFIKNLHPD IDNKALYDTF SVFGDILSSK IATDENGKSK GFGFVHFEEE 60
61 GAAKEAIDAL NGMLLNGQEI YVAPHLSRKE RDSQLEETK
|
| Detection Method: | |
| Confidence: | 653.927757 |
| Match: | 1cvjA_ |
| Description: | Poly(A)-binding protein |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [216-307] |
1 11 21 31 41 51
| | | | | |
1 AHYTNLYVKN INSETTDEQF QELFAKFGPI VSASLEKDAD GKLKGFGFVN YEKHEDAVKA 60
61 VEALNDSELN GEKLYVGRAQ KKNERMHVLK KQ
|
| Detection Method: | |
| Confidence: | 128.31133 |
| Match: | 1l3kA_ |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [308-432] |
1 11 21 31 41 51
| | | | | |
1 YEAYRLEKMA KYQGVNLFVK NLDDSVDDEK LEEEFAPYGT ITSAKVMRTE NGKSKGFGFV 60
61 CFSTPEEATK AITEKNQQIV AGKPLYVAIA QRKDVRRSQL AQQIQARNQM RYQQATAAAA 120
121 AAAAG
|
| Detection Method: | |
| Confidence: | 128.31133 |
| Match: | 1l3kA_ |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [433-485] |
1 11 21 31 41 51
| | | | | |
1 MPGQFMPPMF YGVMPPRGVP FNGPNPQQMN PMGGMPKNGM PPQFRNGPVY GVP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.530 | a.4.1 | Homeodomain-like |
| View | Download | 0.374 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.497 | a.4.1 | Homeodomain-like |
| View | Download | 0.381 | a.4.1 | Homeodomain-like |
| View | Download | 0.325 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.269 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.238 | a.159.2 | FF domain |
|
Region A: Residues: [486-577] |
1 11 21 31 41 51
| | | | | |
1 PQGGFPRNAN DNNQFYQQKQ RQALGEQLYK KVSAKTSNEE AAGKITGMIL DLPPQEVFPL 60
61 LESDELFEQH YKEASAAYES FKKEQEQQTE QA
|
| Detection Method: | |
| Confidence: | 390.67837 |
| Match: | 1ifwA_ |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
