| Protein: | RAD4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 754 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..754] | [1..754] |
|
|
0.0 | [20..667] | [6..686] |
|
|
0.0 | [286..671] | [455..833] |
|
|
0.0 | [289..671] | [378..753] |
|
|
0.0 | [289..671] | [495..870] |
|
Region A: Residues: [1-244] |
1 11 21 31 41 51
| | | | | |
1 MNEDLPKEYF ELIRKALNEK EAEKAPLSRR RRVRRKNQPL PDAKKKFKTG LNELPRESVV 60
61 TVNLDSSDDG VVTVPTDDSV EEIQSSEEDY DSEEFEDVTD GNEVAGVEDI SVEIKPSSKR 120
121 NSDARRTSRN VCSNEERKRR KYFHMLYLVC LMVHGFIRNE WINSKRLSRK LSNLVPEKVF 180
181 ELLHPQKDEE LPLRSTRKLL DGLKKCMELW QKHWKITKKY DNEGLYMRTW KEIEMSANNK 240
241 RKFK
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [245-694] |
1 11 21 31 41 51
| | | | | |
1 TLKRSDFLRA VSKGHGDPDI SVQGFVAMLR ACNVNARLIM SCQPPDFTNM KIDTSLNGNN 60
61 AYKDMVKYPI FWCEVWDKFS KKWITVDPVN LKTIEQVRLH SKLAPKGVAC CERNMLRYVI 120
121 AYDRKYGCRD VTRRYAQWMN SKVRKRRITK DDFGEKWFRK VITALHHRKR TKIDDYEDQY 180
181 FFQRDESEGI PDSVQDLKNH PYYVLEQDIK QTQIVKPGCK ECGYLKVHGK VGKVLKVYAK 240
241 RDIADLKSAR QWYMNGRILK TGSRCKKVIK RTVGRPKGEA EEEDERLYSF EDTELYIPPL 300
301 ASASGEITKN TFGNIEVFAP TMIPGNCCLV ENPVAIKAAR FLGVEFAPAV TSFKFERGST 360
361 VKPVLSGIVV AKWLREAIET AIDGIEFIQE DDNRKEHLLG ALESWNTLLL KLRIRSKLNS 420
421 TYGKIAEEEP NVTKEQNIAD NHDNTETFMG
|
| Detection Method: | |
| Confidence: | 256.130768 |
| Match: | PF03835 |
| Description: | DNA repair protein Rad4 |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [695-754] |
1 11 21 31 41 51
| | | | | |
1 GGFLPGIANH EARPYSEPSE PEDSLDYVSV DKAEESATDD DVGEDYSDFM KELEMSEESD 60
61
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.531 | a.4.1 | Homeodomain-like |
| View | Download | 0.772 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.658 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.526 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.772 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.658 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.607 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.531 | a.4.1 | Homeodomain-like |
| View | Download | 0.526 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.498 | a.4.1 | Homeodomain-like |
| View | Download | 0.489 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.457 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.398 | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.397 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.385 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.385 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.380 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.332 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.313 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.307 | a.20.1 | PGBD-like |
| View | Download | 0.295 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.267 | a.4.7 | Ribosomal protein L11, C-terminal domain |
| View | Download | 0.262 | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.257 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.256 | a.4.8 | Ribosomal protein S18 |
| View | Download | 0.232 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.211 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.210 | a.6.1 | Putative DNA-binding domain |
