| Protein: | UBP3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 912 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..912] | [1..912] |
|
|
6.0E-84 | [120..912] | [97..791] |
|
|
8.0E-78 | [150..912] | [127..796] |
|
|
9.0E-78 | [150..912] | [154..823] |
|
Region A: Residues: [1-253] |
1 11 21 31 41 51
| | | | | |
1 MNMQDANKEE SYSMYPKTSS PPPPTPTNMQ IPIYQAPLQM YGYTQAPYLY PTQIPAYSFN 60
61 MVNQNQPIYH QSGSPHHLPP QNNINGGSTT NNNNINKKKW HSNGITNNNG SSGNQGANSS 120
121 GSGMSYNKSH TYHHNYSNNH IPMMASPNSG SNAGMKKQTN SSNGNGSSAT SPSYSSYNSS 180
181 SQYDLYKFDV TKLKNLKENS SNLIQLPLFI NTTEAEFAAA SVQRYELNMK ALNLNSESLE 240
241 NSSVEKSSAH HHT
|
| Detection Method: |  |
| Confidence: | 14.84 |
| Match: | 1i3qA |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [254-416] |
1 11 21 31 41 51
| | | | | |
1 KSHSIPKHNE EVKTETHGEE EDAHDKKPHA SKDAHELKKK TEVKKEDAKQ DRNEKVIQEP 60
61 QATVLPVVDK KEPEESVEEN TSKTSSPSPS PPAAKSWSAI ASDAIKSRQA SNKTVSGSMV 120
121 TKTPISGTTA GVSSTNMAAA TIGKSSSPLL SKQPQKKDKK YVP
|
| Detection Method: | |
| Confidence: | 15.0 |
| Match: | 1ldvA |
| Description: | No description for 1ldvA was found. |
|
Region A: Residues: [417-499] |
1 11 21 31 41 51
| | | | | |
1 PSTKGIEPLG SIALRMCFDP DFISYVLRNK DVENKIPVHS IIPRGIINRA NICFMSSVLQ 60
61 VLLYCKPFID VINVLSTRNT NSR
|
| Detection Method: | |
| Confidence: | 9.79588 |
| Match: | PF00442 |
| Description: | No description for PF00442 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [500-575] |
1 11 21 31 41 51
| | | | | |
1 VGTSSCKLLD ACLTMYKQFD KETYEKKFLE NADDAEKTTE SDAKKSSKSK SFQHCATADA 60
61 VKPDEFYKTL STIPKF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [576-812] |
1 11 21 31 41 51
| | | | | |
1 KDLQWGHQED AEEFLTHLLD QLHEELISAI DGLTDNEIQN MLQSINDEQL KVFFIRNLSR 60
61 YGKAEFIKNA SPRLKELIEK YGVINDDSTE ENGWHEVSGS SKRGKKTKTA AKRTVEIVPS 120
121 PISKLFGGQF RSVLDIPNNK ESQSITLDPF QTIQLDISDA GVNDLETAFK KFSEYELLPF 180
181 KSSSGNDVEA KKQTFIDKLP QVLLIQFKRF SFINNVNKDN AMTNYNAYNG RIEKIRK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [813-912] |
1 11 21 31 41 51
| | | | | |
1 KIKYGHELII PEESMSSITL KNNTSGIDDR RYKLTGVIYH HGVSSDGGHY TADVYHSEHN 60
61 KWYRIDDVNI TELEDDDVLK GGEEASDSRT AYILMYQKRN
|
| Detection Method: | |
| Confidence: | 24.267606 |
| Match: | PF00443 |
| Description: | Ubiquitin carboxyl-terminal hydrolase |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
